Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018097A_C01 KMC018097A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177175.2| hypothetical protein; protein id: At1g70180.1, ... 113 2e-24
pir||F96724 hypothetical protein F20P5.10 [imported] - Arabidops... 95 9e-19
gb|AAH46668.1| Similar to splicing factor, arginine/serine-rich ... 39 0.080
gb|ZP_00054228.1| hypothetical protein [Magnetospirillum magneto... 38 0.14
gb|AAL56665.1|AF274003_1 splicing-related factor RNPS1 [Homo sap... 37 0.23
>ref|NP_177175.2| hypothetical protein; protein id: At1g70180.1, supported by cDNA:
gi_17473773 [Arabidopsis thaliana]
gi|17473774|gb|AAL38323.1| unknown protein [Arabidopsis
thaliana]
Length = 460
Score = 113 bits (283), Expect = 2e-24
Identities = 73/145 (50%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Frame = -2
Query: 437 MSDTSR-GRVTITLGRSGQVVKRDVSGADVAFSSSVSSAGSKRSVRDRIGSNADSSMWHG 261
MS+ SR RVTITLGRSGQVV R S D + + G+KRSV++R+G+ DSS++ G
Sbjct: 1 MSEGSRRSRVTITLGRSGQVVNRAASDIDDGY--ELPRVGTKRSVKERLGNPLDSSVYGG 58
Query: 260 NGLASNKRQRGDMSSRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKA 81
+ S KRQRG+ S +D +I ++DLR KL+QK+A R+A+S D+ DLREKLS++
Sbjct: 59 EEVVS-KRQRGEASFSG--NDLQISRNDLRFKLMQKNAQRRAQS-DEGCTMDLREKLSRS 114
Query: 80 VQPPRDSFNSKPRMPEPRERSLLST 6
QPPR S +++PRM EPR+R L S+
Sbjct: 115 EQPPR-SLDTRPRMAEPRDRPLSSS 138
>pir||F96724 hypothetical protein F20P5.10 [imported] - Arabidopsis thaliana
gi|2194122|gb|AAB61097.1| F20P5.10 gene product
[Arabidopsis thaliana]
Length = 488
Score = 94.7 bits (234), Expect = 9e-19
Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Frame = -2
Query: 395 RSGQVVKRDVSGADVAFSSSVSSAGSKRSVRDRIGSNADSSMWHGNGLASNKRQRGDMS- 219
R+ VV R S D + + G+KRSV++R+G+ DSS++ G + S KRQRG+ S
Sbjct: 56 RNLMVVNRAASDIDDGYE--LPRVGTKRSVKERLGNPLDSSVYGGEEVVS-KRQRGEASF 112
Query: 218 SRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKAVQPPRDSFNSKPRM 39
S NG+D I ++DLR KL+QK+A R+A+S D+ DLREKLS++ QPPR S +++PRM
Sbjct: 113 SGNGID---ISRNDLRFKLMQKNAQRRAQS-DEGCTMDLREKLSRSEQPPR-SLDTRPRM 167
Query: 38 PEPRERSLLST 6
EPR+R L S+
Sbjct: 168 AEPRDRPLSSS 178
>gb|AAH46668.1| Similar to splicing factor, arginine/serine-rich 6 [Xenopus laevis]
Length = 667
Score = 38.5 bits (88), Expect = 0.080
Identities = 35/141 (24%), Positives = 55/141 (38%)
Frame = -2
Query: 440 DMSDTSRGRVTITLGRSGQVVKRDVSGADVAFSSSVSSAGSKRSVRDRIGSNADSSMWHG 261
D SR R RS K D S + S S + SKR DR GS + S
Sbjct: 456 DEMSLSRSRENRERSRSPSKSKHDRSRSQGKHEMSGSRSKSKR---DRSGSRSTSKQERS 512
Query: 260 NGLASNKRQRGDMSSRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKA 81
N + +KR+R S++ + R + +S S++ S+ + + R +
Sbjct: 513 NSRSKSKRERSSSRSKSKRERSSSRSQSKRERSSSRSKSKRERSSSRSKSKWERSRSRSK 572
Query: 80 VQPPRDSFNSKPRMPEPRERS 18
+ R +SK + R RS
Sbjct: 573 SKRERSHSHSKGKRERSRSRS 593
>gb|ZP_00054228.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 540
Score = 37.7 bits (86), Expect = 0.14
Identities = 43/157 (27%), Positives = 68/157 (42%), Gaps = 16/157 (10%)
Frame = -2
Query: 443 IDMSDTSRGRVTIT---LGRSG-QVVKRDVSGADVAFSSSVSSAGSKRSVRDRIGSNA-- 282
+D SD + T LG SG Q+ + +D A S+ G RSV D S+
Sbjct: 261 VDPSDMLKAAAEATARALGASGCQIFRIQSEDSDFALSAEYGEFGEARSVLDTFESSDHY 320
Query: 281 DSSMWHGNGLASNKRQRGDMSSRNGL----------DDGRIGKDDLRLKLIQKSASRQAE 132
DS + LAS R R ++ L DD R+ DD+ ++ A+ Q
Sbjct: 321 DSDLRDWRVLASVCRYRHSINGAVLLWRQMNRAAWSDDDRLLIDDVANQV--GLAAEQIT 378
Query: 131 SNDKKRHGDLREKLSKAVQPPRDSFNSKPRMPEPRER 21
++++ + L+ VQPPR +P++P P+ R
Sbjct: 379 NHERMLKLSRTDGLTGPVQPPRLLRGDRPQVPAPQAR 415
>gb|AAL56665.1|AF274003_1 splicing-related factor RNPS1 [Homo sapiens]
Length = 282
Score = 37.0 bits (84), Expect = 0.23
Identities = 36/138 (26%), Positives = 54/138 (39%)
Frame = -2
Query: 440 DMSDTSRGRVTITLGRSGQVVKRDVSGADVAFSSSVSSAGSKRSVRDRIGSNADSSMWHG 261
+ S+ RGR RS S + + SSS SS+GS S GS++ S+
Sbjct: 28 ESSEKDRGRDKTRKRRSAS----SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA---- 79
Query: 260 NGLASNKRQRGDMSSRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKA 81
+ R +SR+ S+S + S ++RH + R SK+
Sbjct: 80 -----SSRSGSSSTSRSS----------------SSSSSSGSPSPSRRRHDNRRRSRSKS 118
Query: 80 VQPPRDSFNSKPRMPEPR 27
P RD K R P P+
Sbjct: 119 KPPKRDEKERKRRSPSPK 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,400,537
Number of Sequences: 1393205
Number of extensions: 12160159
Number of successful extensions: 38767
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 36878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38672
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
