Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018090A_C01 KMC018090A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10370|HMGB_SOYBN HMG-Y related protein B (SB16B protein) gi|... 151 3e-36
sp|Q00423|HMGA_SOYBN HMG-Y related protein A (SB16A protein) gi|... 151 4e-36
pir||T09584 high mobility group protein HMGI/Y-1 - sword bean gi... 151 4e-36
pir||T09585 high mobility group protein HMGI/Y-2 - sword bean gi... 142 1e-33
pir||S57948 HMGI/Y protein - garden pea gi|899367|emb|CAA61747.1... 117 8e-26
>sp|Q10370|HMGB_SOYBN HMG-Y related protein B (SB16B protein) gi|99916|pir||S22311
HMG-Y-related protein (variant B) - soybean (fragment)
gi|18649|emb|CAA41199.1| HMG-Y related protein,variant B
[Glycine max]
Length = 152
Score = 151 bits (382), Expect = 3e-36
Identities = 79/100 (79%), Positives = 83/100 (83%), Gaps = 2/100 (2%)
Frame = -3
Query: 472 DPNAPXKRGRGXPPKPKAALPLDTVVAPPRPRGRPPKDPNAEPK-PKV-VSIASGRPRGR 299
DPNAP KRGRG PPKPK LP TVV+PPRPRGRPPKDPNA PK PK + A+GRPRGR
Sbjct: 54 DPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPATGRPRGR 113
Query: 298 PKKVARSAAAASPGAAVSSGRPRGRPPKVKPQLTEVSVES 179
PKKVARS A SP AVS+GRPRGRPPKVKPQLTEVSVES
Sbjct: 114 PKKVARSPAVPSP-TAVSTGRPRGRPPKVKPQLTEVSVES 152
>sp|Q00423|HMGA_SOYBN HMG-Y related protein A (SB16A protein) gi|99915|pir||S22310
HMG-Y-related protein (variant A) - soybean
gi|18647|emb|CAA41201.1| HMG-Y related protein variant A
[Glycine max]
Length = 176
Score = 151 bits (381), Expect = 4e-36
Identities = 79/100 (79%), Positives = 82/100 (82%), Gaps = 2/100 (2%)
Frame = -3
Query: 472 DPNAPXKRGRGXPPKPKAALPLDTVVAPPRPRGRPPKDPNAEPK-PKV-VSIASGRPRGR 299
DPNAP KRGRG PPKPK LP TVV+PPRPRGRPPKDPNA PK PK + SGRPRGR
Sbjct: 78 DPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPGSGRPRGR 137
Query: 298 PKKVARSAAAASPGAAVSSGRPRGRPPKVKPQLTEVSVES 179
PKKV RS A A+P AVSSGRPRGRPPKVKPQLTEVSVES
Sbjct: 138 PKKVPRSPAVAAP-TAVSSGRPRGRPPKVKPQLTEVSVES 176
>pir||T09584 high mobility group protein HMGI/Y-1 - sword bean
gi|1181589|dbj|BAA11766.1| high mobility group protein
[Canavalia gladiata] gi|1483173|dbj|BAA13133.1| high
mobility group protein [Canavalia gladiata]
Length = 178
Score = 151 bits (381), Expect = 4e-36
Identities = 78/100 (78%), Positives = 82/100 (82%), Gaps = 2/100 (2%)
Frame = -3
Query: 472 DPNAPXKRGRGXPPKPKAALPLDTVVAPPRPRGRPPKDPNAEPK-PKV-VSIASGRPRGR 299
DPNAP KRGRG PPKPK LP TV++PPRPRGRPPKDPNA PK PK VS SGRPRGR
Sbjct: 80 DPNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNAPPKSPKTKVSTGSGRPRGR 139
Query: 298 PKKVARSAAAASPGAAVSSGRPRGRPPKVKPQLTEVSVES 179
PKK+ARS AA +P V SGRPRGRPPKVKPQLTEVSVES
Sbjct: 140 PKKIARSPAAVAP-TPVPSGRPRGRPPKVKPQLTEVSVES 178
>pir||T09585 high mobility group protein HMGI/Y-2 - sword bean
gi|1181591|dbj|BAA11767.1| high mobility group protein
[Canavalia gladiata] gi|1483175|dbj|BAA13134.1| high
mobility group protein [Canavalia gladiata]
Length = 178
Score = 142 bits (359), Expect = 1e-33
Identities = 74/100 (74%), Positives = 79/100 (79%), Gaps = 2/100 (2%)
Frame = -3
Query: 472 DPNAPXKRGRGXPPKPKAALPLDTVVAPPRPRGRPPKDPNAEPK-PKV-VSIASGRPRGR 299
DP +P KRGRG PPKPK LP TV++PPRPRGRPPKDPNA K PK VS SGRPRGR
Sbjct: 80 DPTSPPKRGRGRPPKPKVPLPPGTVLSPPRPRGRPPKDPNAPTKSPKAKVSTGSGRPRGR 139
Query: 298 PKKVARSAAAASPGAAVSSGRPRGRPPKVKPQLTEVSVES 179
PKK+ARSAA +P SGRPRGRPPKVKPQLTEVSVES
Sbjct: 140 PKKIARSAAVVAPTPG-PSGRPRGRPPKVKPQLTEVSVES 178
>pir||S57948 HMGI/Y protein - garden pea gi|899367|emb|CAA61747.1| HMGI/Y [Pisum
sativum] gi|1435175|emb|CAA67752.1| HMG-I/Y [Pisum
sativum]
Length = 197
Score = 117 bits (292), Expect = 8e-26
Identities = 68/118 (57%), Positives = 73/118 (61%), Gaps = 22/118 (18%)
Frame = -3
Query: 472 DPNAPXKRGRGXPPKPKAAL--PLDTVVAPPRPRGRPPKDPNAEPKPKVVSIASGRPRGR 299
DPNAP KRGRG PPK K L P V+ PRPRGRPPKDPNA PK S SGRPRGR
Sbjct: 80 DPNAPPKRGRGRPPKAKDPLASPPSGAVSTPRPRGRPPKDPNAPPKTPKAS-GSGRPRGR 138
Query: 298 PKKVARS----AAAASP----------------GAAVSSGRPRGRPPKVKPQLTEVSV 185
PKK+AR+ A+ SP SSGRPRGRPPKVKPQLT+VSV
Sbjct: 139 PKKIARTEDVDASTPSPVSVAAVNVDVVVPCVAAVPTSSGRPRGRPPKVKPQLTQVSV 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,415,490
Number of Sequences: 1393205
Number of extensions: 11854549
Number of successful extensions: 88344
Number of sequences better than 10.0: 1808
Number of HSP's better than 10.0 without gapping: 54906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76688
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
