Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018073A_C01 KMC018073A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568973.1| expressed protein; protein id: At5g63480.1, sup... 105 6e-22
gb|AAM62832.1| unknown [Arabidopsis thaliana] 104 1e-21
gb|EAA30739.1| hypothetical protein [Neurospora crassa] 38 0.11
gb|ZP_00069058.1| hypothetical protein [Oenococcus oeni MCW] 36 0.42
gb|EAA07978.1| agCP1333 [Anopheles gambiae str. PEST] 35 0.94
>ref|NP_568973.1| expressed protein; protein id: At5g63480.1, supported by cDNA:
16144. [Arabidopsis thaliana] gi|9758289|dbj|BAB08813.1|
gene_id:MLE2.11~unknown protein [Arabidopsis thaliana]
Length = 189
Score = 105 bits (262), Expect = 6e-22
Identities = 60/108 (55%), Positives = 77/108 (70%), Gaps = 5/108 (4%)
Frame = -3
Query: 675 SHNADSGAAIPGAGGAX---EEARLRYKNAVAGLRTVLAAIPDSQ-AKALDGDSAV-SPA 511
SH+++S G G +EA LRYKN+V LR VLAAIP+SQ AKA + + + SP
Sbjct: 81 SHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQKAKASEMQNGLGSPE 140
Query: 510 DEAEIERLEERASSLRKELANKNLHLKALIDQLRELVTDIATWQSPFS 367
E EIE+LEE+A SLR E+A KN+H+K LID+LREL+ DI+TWQSP S
Sbjct: 141 SEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCS 188
>gb|AAM62832.1| unknown [Arabidopsis thaliana]
Length = 178
Score = 104 bits (259), Expect = 1e-21
Identities = 60/108 (55%), Positives = 76/108 (69%), Gaps = 5/108 (4%)
Frame = -3
Query: 675 SHNADSGAAIPGAGGAX---EEARLRYKNAVAGLRTVLAAIPDSQ-AKALDGDSAV-SPA 511
SH+++S G G +EA LRYKN+V LR VLAAIP+SQ AKA + + + SP
Sbjct: 70 SHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQKAKASEMQNGLGSPE 129
Query: 510 DEAEIERLEERASSLRKELANKNLHLKALIDQLRELVTDIATWQSPFS 367
E EIE+LEE A SLR E+A KN+H+K LID+LREL+ DI+TWQSP S
Sbjct: 130 REDEIEKLEEEALSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCS 177
>gb|EAA30739.1| hypothetical protein [Neurospora crassa]
Length = 297
Score = 38.1 bits (87), Expect = 0.11
Identities = 30/90 (33%), Positives = 46/90 (50%)
Frame = +2
Query: 404 SSRS*SISAFRCKFLLASSFLREEALSSNLSISASSAGLTAESPSSAFAWESGIAARTVR 583
SS+ I A R LA++ L SS+ S++ SS+ +A + SS +SGI+
Sbjct: 57 SSKPPQIPALR---RLAAATLPSSTTSSSTSLATSSSSTSASTSSSNTTLQSGIS----- 108
Query: 584 SPATAFLYRKRASSXAPPAPGMAAPLSALW 673
+PAT+ ++S APP P +PL W
Sbjct: 109 TPATSIA---SSASPAPPTPVYESPLFVTW 135
>gb|ZP_00069058.1| hypothetical protein [Oenococcus oeni MCW]
Length = 204
Score = 36.2 bits (82), Expect = 0.42
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +2
Query: 419 SISAFRCKFLLASSFLREEALSSNLSISASSAGLTAESPSSAFAWESGIAARTVRSPATA 598
S +AF F +SFL +L+S+LS S +A +T + + F IAA ++ P +A
Sbjct: 34 SWNAFVSLFTPLASFLSGHSLASSLSASLIAAQVTTAATTGLFMMAGPIAALILKKPGSA 93
Query: 599 FLYRKRAS 622
FL AS
Sbjct: 94 FLSNLIAS 101
>gb|EAA07978.1| agCP1333 [Anopheles gambiae str. PEST]
Length = 692
Score = 35.0 bits (79), Expect = 0.94
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Frame = -3
Query: 618 ARLRYKNAVAGLRTVLAAIPDSQAKALDGDSAVS----------------PADEAEIERL 487
A LR KN AG T + P S A AL+ S A AE+++L
Sbjct: 217 ALLRQKNGPAGGPTASLSSPTSGAAALELSSTSDNEPGLLTAAGLSSQRKSATVAEMKQL 276
Query: 486 EERASSLRKELANKNLHLKALIDQLRELVTDI 391
+E +SL KEL +KN L + QL +L +++
Sbjct: 277 QETVASLSKELQDKNGTLLTVQSQLVDLDSEL 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,138,869
Number of Sequences: 1393205
Number of extensions: 11988279
Number of successful extensions: 39794
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 37834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39689
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
