Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018070A_C01 KMC018070A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_005637.2| TAR RNA binding protein 1; TAR RNA loop binding... 35 0.59
pir||S62356 TRP-185 protein - human gi|1184692|gb|AAC50379.1| TA... 35 0.59
emb|CAC15922.1| dJ792D7.1 (TAR (HIV) RNA-binding protein 1) [Hom... 35 0.59
ref|XP_283537.1| hypothetical protein XP_283537 [Mus musculus] g... 33 1.7
ref|NP_193253.2| hypothetical protein; protein id: At4g15180.1 [... 32 3.8
>ref|NP_005637.2| TAR RNA binding protein 1; TAR RNA loop binding protein [Homo
sapiens]
Length = 1621
Score = 35.0 bits (79), Expect = 0.59
Identities = 21/69 (30%), Positives = 41/69 (58%), Gaps = 8/69 (11%)
Frame = -1
Query: 460 VLTKKVKRKPELELEGTHSGPEK--LASLQGE---ERPRSQKQSA---PAGSSHQIKSSA 305
++ + + +KPEL+L+ H+GP + L+SLQ ++P +++QS+ P S ++ S+
Sbjct: 817 MVCEAIDQKPELQLDSLHAGPLESFLSSLQLNQTLQKPHAEEQSSYAHPLECSSVLEESS 876
Query: 304 NISGWSGTV 278
+ GW V
Sbjct: 877 SSQGWGKIV 885
>pir||S62356 TRP-185 protein - human gi|1184692|gb|AAC50379.1| TAR RNA loop
binding protein gi|1586092|prf||2203267A TRP-185 protein
Length = 1621
Score = 35.0 bits (79), Expect = 0.59
Identities = 21/69 (30%), Positives = 41/69 (58%), Gaps = 8/69 (11%)
Frame = -1
Query: 460 VLTKKVKRKPELELEGTHSGPEK--LASLQGE---ERPRSQKQSA---PAGSSHQIKSSA 305
++ + + +KPEL+L+ H+GP + L+SLQ ++P +++QS+ P S ++ S+
Sbjct: 817 MVCEAIDQKPELQLDSLHAGPLESFLSSLQLNQTLQKPHAEEQSSYAHPLECSSVLEESS 876
Query: 304 NISGWSGTV 278
+ GW V
Sbjct: 877 SSQGWGKIV 885
>emb|CAC15922.1| dJ792D7.1 (TAR (HIV) RNA-binding protein 1) [Homo sapiens]
Length = 1185
Score = 35.0 bits (79), Expect = 0.59
Identities = 21/69 (30%), Positives = 41/69 (58%), Gaps = 8/69 (11%)
Frame = -1
Query: 460 VLTKKVKRKPELELEGTHSGPEK--LASLQGE---ERPRSQKQSA---PAGSSHQIKSSA 305
++ + + +KPEL+L+ H+GP + L+SLQ ++P +++QS+ P S ++ S+
Sbjct: 817 MVCEAIDQKPELQLDSLHAGPLESFLSSLQLNQTLQKPHAEEQSSYAHPLECSSVLEESS 876
Query: 304 NISGWSGTV 278
+ GW V
Sbjct: 877 SSQGWGKIV 885
>ref|XP_283537.1| hypothetical protein XP_283537 [Mus musculus]
gi|26352800|dbj|BAC40030.1| unnamed protein product [Mus
musculus]
Length = 189
Score = 33.5 bits (75), Expect = 1.7
Identities = 30/94 (31%), Positives = 37/94 (38%)
Frame = +3
Query: 261 PIHVSLTVPDQPEMLAEDLIWWDDPAGADCFWDLGLSSPCKEANFSGPECVPSNSSSGFL 440
P+H L P +A LI PAGAD G P E GPE + S S+S +
Sbjct: 31 PVHAGLASSRPPPAVAPPLISPQAPAGADPGSIAG--PPHTETRDPGPELLSSTSTSRPV 88
Query: 441 FTFFVKTTSATLKSSRALCASSLTTFIGLGTRTA 542
TF +T + A C T G R A
Sbjct: 89 VTFAPGHKRSTATRATASCTPLRATAPGSTHRLA 122
>ref|NP_193253.2| hypothetical protein; protein id: At4g15180.1 [Arabidopsis
thaliana]
Length = 2303
Score = 32.3 bits (72), Expect = 3.8
Identities = 28/88 (31%), Positives = 38/88 (42%)
Frame = -1
Query: 547 SSAVRVPSPMNVVKEEAHSALDDFRVADVVLTKKVKRKPELELEGTHSGPEKLASLQGEE 368
S A +VP K A S + V+ K VKR+P+ P+K A Q ++
Sbjct: 44 SIATKVPESQPANKPSASSQPVKKKRIVKVIRKVVKRRPKQ--------PQKQADEQLKD 95
Query: 367 RPRSQKQSAPAGSSHQIKSSANISGWSG 284
+P SQ PA S QIK S + G
Sbjct: 96 QPPSQVVQLPAESQLQIKEQDKKSEFKG 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,021,417
Number of Sequences: 1393205
Number of extensions: 10782991
Number of successful extensions: 29620
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 28482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29599
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
