Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018060A_C01 KMC018060A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34800.1|AF227980_1 60S ribosomal protein L35 [Euphorbia es... 192 2e-48
ref|NP_181471.1| 60S ribosomal protein L35; protein id: At2g3939... 186 2e-46
ref|NP_195881.1| ribosomal protein L35 - like; protein id: At5g0... 184 5e-46
ref|NP_187561.1| putative 60S ribosomal protein L35; protein id:... 184 6e-46
ref|NP_191077.1| ribosomal protein L35 -like; protein id: At3g55... 181 7e-45
>gb|AAF34800.1|AF227980_1 60S ribosomal protein L35 [Euphorbia esula]
Length = 123
Score = 192 bits (489), Expect = 2e-48
Identities = 100/109 (91%), Positives = 105/109 (95%)
Frame = -2
Query: 545 ADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREVYK 366
A+LL+QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRL+IAQVLTVISQKQK ALRE YK
Sbjct: 15 AELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKLALREAYK 74
Query: 365 NKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKFAIKV 219
NKK+LPLDLRPKKTRAIRRRLTKHQ SLKTEREKKKE YFPMRK+AIKV
Sbjct: 75 NKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYAIKV 123
>ref|NP_181471.1| 60S ribosomal protein L35; protein id: At2g39390.1, supported by
cDNA: 11583., supported by cDNA: gi_14334861, supported
by cDNA: gi_17104642 [Arabidopsis thaliana]
gi|7441176|pir||T00549 60S ribosomal protein L35
[imported] - Arabidopsis thaliana
gi|3355468|gb|AAC27830.1| 60S ribosomal protein L35
[Arabidopsis thaliana] gi|14334862|gb|AAK59609.1|
putative 60S ribosomal protein L35 [Arabidopsis
thaliana] gi|17104643|gb|AAL34210.1| putative 60S
ribosomal protein L35 [Arabidopsis thaliana]
gi|21536951|gb|AAM61292.1| 60S ribosomal protein L35
[Arabidopsis thaliana]
Length = 123
Score = 186 bits (471), Expect = 2e-46
Identities = 97/109 (88%), Positives = 102/109 (92%)
Frame = -2
Query: 545 ADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREVYK 366
ADL QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR +IAQVLTVISQKQK+ALRE YK
Sbjct: 15 ADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYK 74
Query: 365 NKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKFAIKV 219
NKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE YFP+RK+AIKV
Sbjct: 75 NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
>ref|NP_195881.1| ribosomal protein L35 - like; protein id: At5g02610.1, supported by
cDNA: 14525. [Arabidopsis thaliana]
gi|11276901|pir||T48282 ribosomal protein L35-like -
Arabidopsis thaliana gi|7413650|emb|CAB85998.1|
ribosomal protein L35-like [Arabidopsis thaliana]
Length = 123
Score = 184 bits (468), Expect = 5e-46
Identities = 96/108 (88%), Positives = 102/108 (93%)
Frame = -2
Query: 542 DLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREVYKN 363
DL +QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR +IAQVLTVISQKQK+ALRE YKN
Sbjct: 16 DLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKN 75
Query: 362 KKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKFAIKV 219
KK LPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE YFP+RK+AIKV
Sbjct: 76 KKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIKV 123
>ref|NP_187561.1| putative 60S ribosomal protein L35; protein id: At3g09500.1,
supported by cDNA: 23470. [Arabidopsis thaliana]
gi|6682230|gb|AAF23282.1|AC016661_7 putative 60S
ribosomal protein L35 [Arabidopsis thaliana]
gi|21592412|gb|AAM64363.1| putative 60S ribosomal
protein L35 [Arabidopsis thaliana]
gi|28393549|gb|AAO42195.1| putative 60S ribosomal
protein L35 [Arabidopsis thaliana]
gi|28827254|gb|AAO50471.1| putative 60S ribosomal
protein L35 [Arabidopsis thaliana]
Length = 123
Score = 184 bits (467), Expect = 6e-46
Identities = 96/109 (88%), Positives = 103/109 (94%)
Frame = -2
Query: 545 ADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREVYK 366
+DL +QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR +IAQVLTV SQKQK+ALRE YK
Sbjct: 15 SDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYK 74
Query: 365 NKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKFAIKV 219
NKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKKKE YFP+RK+AIKV
Sbjct: 75 NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIKV 123
>ref|NP_191077.1| ribosomal protein L35 -like; protein id: At3g55170.1 [Arabidopsis
thaliana] gi|11276902|pir||T47656 ribosomal protein
L35-like - Arabidopsis thaliana
gi|7019650|emb|CAB75751.1| ribosomal protein L35-like
[Arabidopsis thaliana]
Length = 123
Score = 181 bits (458), Expect = 7e-45
Identities = 94/109 (86%), Positives = 102/109 (93%)
Frame = -2
Query: 545 ADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREVYK 366
+DL +QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR +IAQVLTV SQKQK+ALRE YK
Sbjct: 15 SDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYK 74
Query: 365 NKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKFAIKV 219
NKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKKK+ YFP+RK+AIKV
Sbjct: 75 NKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIKV 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,314,571
Number of Sequences: 1393205
Number of extensions: 8635725
Number of successful extensions: 27791
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 26468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27733
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
