Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018038A_C01 KMC018038A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565243.1| expressed protein; protein id: At1g80690.1, sup... 166 2e-40
pir||C96839 hypothetical protein F23A5.4 [imported] - Arabidopsi... 160 1e-38
ref|NP_568467.1| putative protein; protein id: At5g25170.1, supp... 135 5e-31
ref|NP_565588.1| expressed protein; protein id: At2g25190.1, sup... 123 2e-27
gb|AAL38722.1| unknown protein [Arabidopsis thaliana] gi|2025907... 118 6e-26
>ref|NP_565243.1| expressed protein; protein id: At1g80690.1, supported by cDNA:
40037. [Arabidopsis thaliana] gi|21593549|gb|AAM65516.1|
unknown [Arabidopsis thaliana]
Length = 227
Score = 166 bits (419), Expect = 2e-40
Identities = 82/151 (54%), Positives = 110/151 (72%), Gaps = 5/151 (3%)
Frame = -1
Query: 570 TILIGKTSMGPGEVRAVMEELAAEYRGNAYNLITKNCNHFCNAACVRLTENPIPSWVNRL 391
+ILIGKT +GP EVRA ME+LA Y+G++YNLITKNCNHFC+ C++LT NPIPSWVNRL
Sbjct: 78 SILIGKTDLGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNPIPSWVNRL 137
Query: 390 ARIGFLCHCVLPVTLNSTKVRHHKIEEKQQC---GEKQALT--SEPNKLTVSNSTSSSSS 226
ARIGF+C+CVLP T+N+T+ ++++ + + C EK+ LT S + T++ +SSSSS
Sbjct: 138 ARIGFMCNCVLPATINATRFGNNRVNQDKSCEAENEKKKLTSVSSRERSTIATPSSSSSS 197
Query: 225 PTSSSSGLRRGRSRTRRARPPSSPFIIGSST 133
P+ G R R R RA PSSP +GSS+
Sbjct: 198 PSVQVRG--RSRKRRPRALQPSSPLTLGSSS 226
>pir||C96839 hypothetical protein F23A5.4 [imported] - Arabidopsis thaliana
gi|6503281|gb|AAF14657.1|AC011713_5 Contains similarity
to gb|AF151904 CGI-146 protein from Homo sapiens. EST
gb|T44446 comes from this gene. [Arabidopsis thaliana]
Length = 231
Score = 160 bits (404), Expect = 1e-38
Identities = 82/155 (52%), Positives = 110/155 (70%), Gaps = 9/155 (5%)
Frame = -1
Query: 570 TILIGKTSMGPGEVRAVMEELAAEYRGNAYNLITKNCNHFCNAACVRLTENPIPSWVNRL 391
+ILIGKT +GP EVRA ME+LA Y+G++YNLITKNCNHFC+ C++LT NPIPSWVNRL
Sbjct: 78 SILIGKTDLGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNPIPSWVNRL 137
Query: 390 ARI----GFLCHCVLPVTLNSTKVRHHKIEEKQQC---GEKQALT--SEPNKLTVSNSTS 238
ARI GF+C+CVLP T+N+T+ ++++ + + C EK+ LT S + T++ +S
Sbjct: 138 ARIGKFSGFMCNCVLPATINATRFGNNRVNQDKSCEAENEKKKLTSVSSRERSTIATPSS 197
Query: 237 SSSSPTSSSSGLRRGRSRTRRARPPSSPFIIGSST 133
SSSSP+ G R R R RA PSSP +GSS+
Sbjct: 198 SSSSPSVQVRG--RSRKRRPRALQPSSPLTLGSSS 230
>ref|NP_568467.1| putative protein; protein id: At5g25170.1, supported by cDNA:
263500. [Arabidopsis thaliana]
Length = 218
Score = 135 bits (339), Expect = 5e-31
Identities = 74/138 (53%), Positives = 86/138 (61%), Gaps = 1/138 (0%)
Frame = -1
Query: 570 TILIGKTSMGPGEVRAVMEELAAEYRGNAYNLITKNCNHFCNAACVRLTENPIPSWVNRL 391
+ILIG+T + P VR ME+LA EY GN+Y+LITKNCNHFCN CV+LT IPSWVNRL
Sbjct: 81 SILIGRTDLDPENVRVFMEKLAEEYSGNSYHLITKNCNHFCNDVCVQLTRRSIPSWVNRL 140
Query: 390 ARIGFLCHCVLPVTLNSTKVRH-HKIEEKQQCGEKQALTSEPNKLTVSNSTSSSSSPTSS 214
AR G C+CVLP LN TKVR EEK EK+ L S ++ S SSS S S
Sbjct: 141 ARFGLFCNCVLPAELNETKVRQVRSKEEKIPEVEKKKLRSRSSRFPPGPSLSSSGSLNRS 200
Query: 213 SSGLRRGRSRTRRARPPS 160
G RR R+ PPS
Sbjct: 201 RRGERR-----RQCLPPS 213
>ref|NP_565588.1| expressed protein; protein id: At2g25190.1, supported by cDNA:
14105., supported by cDNA: gi_13877550, supported by
cDNA: gi_20148724 [Arabidopsis thaliana]
gi|25354456|pir||D84645 hypothetical protein At2g25190
[imported] - Arabidopsis thaliana
gi|4567258|gb|AAD23672.1| expressed protein [Arabidopsis
thaliana] gi|13877551|gb|AAK43853.1|AF370476_1 Unknown
protein [Arabidopsis thaliana]
gi|20148725|gb|AAM10253.1| unknown protein [Arabidopsis
thaliana] gi|21553378|gb|AAM62471.1| unknown
[Arabidopsis thaliana]
Length = 240
Score = 123 bits (308), Expect = 2e-27
Identities = 70/157 (44%), Positives = 91/157 (57%), Gaps = 16/157 (10%)
Frame = -1
Query: 570 TILIGKTSMGPGEVRAVMEELAAEYRGNAYNLITKNCNHFCNAACVRLTENPIPSWVNRL 391
+IL+GKT + EVR ME+LA EY+GN Y+LIT+NCNHFCN C++L + IP WVNRL
Sbjct: 80 SILVGKTDLVAKEVRVFMEKLAEEYQGNKYHLITRNCNHFCNEVCLKLAQKSIPRWVNRL 139
Query: 390 ARIGFLCHCVLPVTLNSTKVRHHKIEEKQQCGEKQ---------ALTSEPNKLTVSNSTS 238
AR+G LC+CVLP LN KVR E + +K+ L+S P+ T N S
Sbjct: 140 ARLGVLCNCVLPPRLNEAKVRRVGKGELSESEKKKLRNRSRSDPLLSSSPSSSTPDNHRS 199
Query: 237 -----SSSSPTSSSSGLRRGRSRTRR--ARPPSSPFI 148
SS + SSSS G + RR A+ SP +
Sbjct: 200 HIRAKSSGNHPSSSSSSSSGSKKNRRPKAQDQKSPSV 236
>gb|AAL38722.1| unknown protein [Arabidopsis thaliana] gi|20259079|gb|AAM14255.1|
unknown protein [Arabidopsis thaliana]
Length = 249
Score = 118 bits (295), Expect = 6e-26
Identities = 64/141 (45%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Frame = -1
Query: 570 TILIGKTSMGPGEVRAVMEELAAEYRGNAYNLITKNCNHFCNAACVRLTENPIPSWVNRL 391
+IL+G+T M EVR+ ME+L+ EY+GN Y+LIT+NCNHFCN ++LT IPSWVNRL
Sbjct: 80 SILVGETEMKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKSIPSWVNRL 139
Query: 390 ARIGFLCHCVLPVTLNSTKVRHHKIEEKQQCGEKQALTSEPNKLTVSNSTSSSSSPTSSS 211
AR+GFLC+CVLP LN TKV+ + K E + + K + S S S +SS+
Sbjct: 140 ARLGFLCNCVLPACLNETKVKRVGKDGKLLL-EGENTKKKKRKKKIRRSRSGPLSSSSSN 198
Query: 210 SGLRRGRSRTR---RARPPSS 157
+ L + R PP S
Sbjct: 199 ARLDNTPTHNRSISTGNPPLS 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,737,451
Number of Sequences: 1393205
Number of extensions: 10236685
Number of successful extensions: 64517
Number of sequences better than 10.0: 327
Number of HSP's better than 10.0 without gapping: 44043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55915
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
