Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018029A_C01 KMC018029A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98163.1| RAB1X [Lotus japonicus] 110 9e-24
ref|NP_568121.1| putative protein; protein id: At5g03530.1, supp... 89 3e-17
gb|AAK98738.1|AC090485_17 Putative GTP-binding protein [Oryza sa... 82 3e-15
emb|CAA98164.1| RAB1Y [Lotus japonicus] 68 8e-11
ref|NP_187602.1| GTP-binding protein, putative; protein id: At3g... 64 1e-09
>emb|CAA98163.1| RAB1X [Lotus japonicus]
Length = 208
Score = 110 bits (276), Expect = 9e-24
Identities = 54/54 (100%), Positives = 54/54 (100%)
Frame = -2
Query: 548 SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS 387
SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS
Sbjct: 155 SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS 208
>ref|NP_568121.1| putative protein; protein id: At5g03530.1, supported by cDNA:
gi_2723476 [Arabidopsis thaliana]
gi|11274537|pir||T48379 AtRab GTP-binding protein -
Arabidopsis thaliana gi|2723477|dbj|BAA24074.1|
GTP-binding protein [Arabidopsis thaliana]
gi|7378638|emb|CAB83314.1| AtRab GTP-binding protein
[Arabidopsis thaliana] gi|26453054|dbj|BAC43603.1|
putative AtRab GTP-binding protein [Arabidopsis
thaliana]
Length = 210
Score = 89.4 bits (220), Expect = 3e-17
Identities = 43/54 (79%), Positives = 47/54 (86%)
Frame = -2
Query: 548 SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS 387
SA+TR+NVEQCFEELALKIME PSLLEEGS+AVKRNILKQK E Q + GCCS
Sbjct: 157 SARTRQNVEQCFEELALKIMEVPSLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210
>gb|AAK98738.1|AC090485_17 Putative GTP-binding protein [Oryza sativa]
Length = 210
Score = 82.4 bits (202), Expect = 3e-15
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = -2
Query: 548 SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCC 390
SAKTRENVE+CFEELALKI+E PSLLEEGS+ VKRN LKQK E +A ++GGCC
Sbjct: 158 SAKTRENVEKCFEELALKILEVPSLLEEGSSVVKRNSLKQKHENKA-KNGGCC 209
>emb|CAA98164.1| RAB1Y [Lotus japonicus]
Length = 207
Score = 67.8 bits (164), Expect = 8e-11
Identities = 32/53 (60%), Positives = 37/53 (69%)
Frame = -2
Query: 548 SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCC 390
SAKTR NV+QCFEEL LKI++ PSLL EGS VK+NI K KQ + CC
Sbjct: 155 SAKTRVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDKQPQADASTSSCC 207
>ref|NP_187602.1| GTP-binding protein, putative; protein id: At3g09910.1 [Arabidopsis
thaliana] gi|6681328|gb|AAF23245.1|AC015985_3 putative
Ras-like GTP-binding protein [Arabidopsis thaliana]
Length = 205
Score = 63.9 bits (154), Expect = 1e-09
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = -2
Query: 548 SAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRNILKQKQEPQASQHGGCCS 387
SA+TRENV CFEELALKIME PSLLEEGS++VKR K + +A Q G CCS
Sbjct: 157 SARTRENVNGCFEELALKIMEVPSLLEEGSSSVKR-----KPDYRAHQ-GRCCS 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,797,645
Number of Sequences: 1393205
Number of extensions: 8962443
Number of successful extensions: 21039
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 20568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21033
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
