Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018025A_C01 KMC018025A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192852.1| putative Ap2 domain protein; protein id: At4g11... 42 0.009
ref|NP_782128.1| methyl-accepting chemotaxis protein [Clostridiu... 40 0.027
gb|AAK15605.1|AF284018_1 BRCA1 [Felis catus] 37 0.30
gb|AAM98190.1| putative Ap2 domain protein [Arabidopsis thaliana] 34 1.5
ref|NP_194106.1| putative Ap2 domain protein; protein id: At4g23... 34 1.5
>ref|NP_192852.1| putative Ap2 domain protein; protein id: At4g11140.1 [Arabidopsis
thaliana] gi|7488058|pir||T01919 probable Ap2 domain
protein - Arabidopsis thaliana gi|3600050|gb|AAC35537.1|
contains similarity to AP2 domain containing proteins
[Arabidopsis thaliana] gi|4850293|emb|CAB43049.1|
putative Ap2 domain protein [Arabidopsis thaliana]
gi|7267813|emb|CAB81215.1| putative Ap2 domain protein
[Arabidopsis thaliana]
Length = 287
Score = 41.6 bits (96), Expect = 0.009
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Frame = -1
Query: 656 PISVLQCSSLSEEGESVTVKEEENSSFSENLSTEKIALPTTEKMEESESLFPI--PNDVM 483
P+SVL+ GES VKEE +ST +I + S+ P+ +DV
Sbjct: 175 PVSVLESPF---SGESTAVKEE-----FVGVSTAEIVVKKEPSFNGSDFSAPLFSDDDVF 226
Query: 482 QFDVQFQDV----LYGNNSFNDVLPERSMFFEDDGGCCSSSTNLFEDLEFGFNSWNNTTT 315
F + L+G+N F D M F G S S GF+SW+
Sbjct: 227 GFSTSMSESFGGDLFGDNLFAD------MSFGSGFGFGSGS---------GFSSWHV--- 268
Query: 314 MNSNRDFFQDIDDLFVSDPLLVL 246
D FQDI DLF SDP+L +
Sbjct: 269 ----EDHFQDIGDLFGSDPVLTV 287
>ref|NP_782128.1| methyl-accepting chemotaxis protein [Clostridium tetani E88]
gi|28203624|gb|AAO36065.1| methyl-accepting chemotaxis
protein [Clostridium tetani E88]
Length = 563
Score = 40.0 bits (92), Expect = 0.027
Identities = 30/101 (29%), Positives = 52/101 (50%), Gaps = 2/101 (1%)
Frame = -1
Query: 635 SSLSEEGESVTVKEEENSSFSENLST--EKIALPTTEKMEESESLFPIPNDVMQFDVQFQ 462
+S++ E+++ EE +S +EN+ST E +A T E ++ESL I N + F +
Sbjct: 264 NSINSSSENLSAISEEMASSTENISTAIEDVAKGTGE---QAESLVHITNILNTFGDSIK 320
Query: 461 DVLYGNNSFNDVLPERSMFFEDDGGCCSSSTNLFEDLEFGF 339
++ G ND+ ++ GG +S+N +DLE F
Sbjct: 321 SLVKGLTQLNDM-------SDEIGGTAKASSNKMKDLEEAF 354
>gb|AAK15605.1|AF284018_1 BRCA1 [Felis catus]
Length = 948
Score = 36.6 bits (83), Expect = 0.30
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = -1
Query: 656 PISVLQCSSLSEEGESVTVKEEENSSFSENLSTEKIALPTTEKMEESESLFPIPNDVMQF 477
PIS +C + +GE+ V + N+ FS L ++ + P E S+ PND++
Sbjct: 828 PISNCKCPEMKRQGENEGVVQSVNADFSPCLISDNVEQP-MESSRASQVCSETPNDLLN- 885
Query: 476 DVQFQDVLYGNNSFNDVLPERSMFF 402
D + G SF + ERS F
Sbjct: 886 ----GDEIKGKISFAESAKERSAVF 906
>gb|AAM98190.1| putative Ap2 domain protein [Arabidopsis thaliana]
Length = 343
Score = 34.3 bits (77), Expect = 1.5
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1
Query: 374 STNLFEDLEFGFNSWNNTTTMNSNRDFFQDIDDLFVSDPLLVL 246
+ ++ D+ FGF+ + ++ + D FQDI DLF SDPLL +
Sbjct: 302 TADMCTDMNFGFDFGSGLSSWHME-DHFQDIGDLFGSDPLLAV 343
>ref|NP_194106.1| putative Ap2 domain protein; protein id: At4g23750.1, supported by
cDNA: gi_15982736 [Arabidopsis thaliana]
gi|7486739|pir||T05607 hypothetical protein F9D16.220 -
Arabidopsis thaliana gi|4454044|emb|CAA23041.1| putative
Ap2 domain protein [Arabidopsis thaliana]
gi|7269224|emb|CAB81293.1| putative Ap2 domain protein
[Arabidopsis thaliana] gi|15982737|gb|AAL09709.1|
AT4g23750/F9D16_220 [Arabidopsis thaliana]
Length = 343
Score = 34.3 bits (77), Expect = 1.5
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -1
Query: 374 STNLFEDLEFGFNSWNNTTTMNSNRDFFQDIDDLFVSDPLLVL 246
+ ++ D+ FGF+ + ++ + D FQDI DLF SDPLL +
Sbjct: 302 TADMCTDMNFGFDFGSGLSSWHME-DHFQDIGDLFGSDPLLAV 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,871,530
Number of Sequences: 1393205
Number of extensions: 11017920
Number of successful extensions: 34992
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 33267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34958
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
