Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018021A_C01 KMC018021A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190464.1| polygalacturonase, putative; protein id: At3g48... 194 4e-49
ref|NP_179968.1| polygalacturonase, putative; protein id: At2g23... 187 5e-47
ref|NP_194081.1| polygalacturonase, putative; protein id: At4g23... 187 5e-47
ref|NP_191708.1| polygalacturonase, putative; protein id: At3g61... 184 8e-46
ref|NP_190486.1| putative protein; protein id: At3g49170.1 [Arab... 176 1e-43
>ref|NP_190464.1| polygalacturonase, putative; protein id: At3g48950.1 [Arabidopsis
thaliana] gi|11357281|pir||T46135
endo-polygalacturonase-like protein - Arabidopsis
thaliana gi|6522571|emb|CAB62015.1|
endo-polygalacturonase-like protein [Arabidopsis
thaliana]
Length = 469
Score = 194 bits (494), Expect = 4e-49
Identities = 95/145 (65%), Positives = 110/145 (75%), Gaps = 5/145 (3%)
Frame = -1
Query: 545 TAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKN 366
TAVGRGAYVK+I+ + + + TMKYVFWM+G+YGSHPD GFDPKALP IT INYRD+ A+N
Sbjct: 323 TAVGRGAYVKDIYARRITMKTMKYVFWMSGNYGSHPDEGFDPKALPEITNINYRDMTAEN 382
Query: 365 VTYPAKLEGIANDPFTGICISNANIEKV--GKKLAWNCTDVHGVTSNVSPEPCALLQEKP 192
VT A L+GI DPFTGICISN I KK+ WNCTDV GVTS V+PEPC+LL EK
Sbjct: 383 VTMSASLDGIDKDPFTGICISNVTIALAAKAKKMQWNCTDVAGVTSRVTPEPCSLLPEKK 442
Query: 191 GK---FDCPFPSDKLPIESVQLKTC 126
+ DC FPSD +PIESV LK C
Sbjct: 443 AQAKNVDCAFPSDLIPIESVVLKKC 467
>ref|NP_179968.1| polygalacturonase, putative; protein id: At2g23900.1 [Arabidopsis
thaliana] gi|25412169|pir||B84630 probable
polygalacturonase [imported] - Arabidopsis thaliana
gi|3738338|gb|AAC63679.1| putative polygalacturonase
[Arabidopsis thaliana]
Length = 466
Score = 187 bits (476), Expect = 5e-47
Identities = 87/143 (60%), Positives = 105/143 (72%), Gaps = 2/143 (1%)
Frame = -1
Query: 545 TAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKN 366
TAVGRG YVK+IF + + TMKYVFWM+G+Y HP +GFDPKA+P IT INYRD+ A N
Sbjct: 323 TAVGRGGYVKDIFARRFTMKTMKYVFWMSGAYNQHPASGFDPKAMPVITNINYRDMTADN 382
Query: 365 VTYPAKLEGIANDPFTGICISNANIEKVG--KKLAWNCTDVHGVTSNVSPEPCALLQEKP 192
VT PA+L+G NDPFT IC+SN I+ KKL WNCT + GV+S V+P+PC+LL EK
Sbjct: 383 VTQPARLDGFKNDPFTKICMSNIKIDLAAEPKKLLWNCTSISGVSSKVTPKPCSLLPEKG 442
Query: 191 GKFDCPFPSDKLPIESVQLKTCS 123
DC FP DK+PIESV L CS
Sbjct: 443 APVDCAFPVDKIPIESVVLNKCS 465
>ref|NP_194081.1| polygalacturonase, putative; protein id: At4g23500.1 [Arabidopsis
thaliana] gi|7485556|pir||T05388 hypothetical protein
F16G20.200 - Arabidopsis thaliana
gi|3451075|emb|CAA20471.1| putative protein [Arabidopsis
thaliana] gi|7269198|emb|CAB79305.1| putative protein
[Arabidopsis thaliana] gi|23296346|gb|AAN13048.1|
unknown protein [Arabidopsis thaliana]
Length = 495
Score = 187 bits (476), Expect = 5e-47
Identities = 89/144 (61%), Positives = 109/144 (74%), Gaps = 4/144 (2%)
Frame = -1
Query: 545 TAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKN 366
TA+GRG YVK+++V+GM + TMKYVFWMTGSYGSHPD +DPKALP I INY+D++A+N
Sbjct: 345 TAIGRGGYVKDVYVRGMTMMTMKYVFWMTGSYGSHPDDHYDPKALPVIQNINYQDMVAEN 404
Query: 365 VTYPAKLEGIANDPFTGICISNANI--EKVGKKLAWNCTDVHGVTSNVSPEPCALLQEK- 195
VT PA+L GI+ D FTGICISN I K KK+ WNCTDV G TS V+P+PC LL EK
Sbjct: 405 VTMPAQLAGISGDQFTGICISNVTITLSKKPKKVLWNCTDVSGYTSGVTPQPCQLLPEKQ 464
Query: 194 PGK-FDCPFPSDKLPIESVQLKTC 126
PG C FP D +PI+ V+L+ C
Sbjct: 465 PGTVVPCNFPEDPIPIDEVKLQRC 488
>ref|NP_191708.1| polygalacturonase, putative; protein id: At3g61490.1 [Arabidopsis
thaliana] gi|11357717|pir||T47941 hypothetical protein
F2A19.90 - Arabidopsis thaliana
gi|6850840|emb|CAB71079.1| putative protein [Arabidopsis
thaliana]
Length = 476
Score = 184 bits (466), Expect = 8e-46
Identities = 90/153 (58%), Positives = 113/153 (73%), Gaps = 10/153 (6%)
Frame = -1
Query: 545 TAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKN 366
TAVGRGA+VKNI+VKGMNL TMK+VFWMTG+Y +H D+ +DP ALP ITGINYRD++A+N
Sbjct: 322 TAVGRGAFVKNIYVKGMNLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINYRDIVAEN 381
Query: 365 VTYPAKLEGIANDPFTGICISNANIEKVG--KKLAWNCTDVHGVTSNVSPEPCALL---- 204
V+ +LEGI+ DPFTGICISNA I KK W C+DV GVTS V P+PC LL
Sbjct: 382 VSMAGRLEGISGDPFTGICISNATISMAAKHKKAIWMCSDVEGVTSGVDPKPCDLLDGQE 441
Query: 203 ----QEKPGKFDCPFPSDKLPIESVQLKTCSFK 117
++K C FP+D L I++V+LKTCS++
Sbjct: 442 SETTKKKMIDGGCDFPTDVLEIDNVELKTCSYQ 474
>ref|NP_190486.1| putative protein; protein id: At3g49170.1 [Arabidopsis thaliana]
gi|11357746|pir||T45822 hypothetical protein F2K15.30 -
Arabidopsis thaliana gi|6723387|emb|CAB66396.1| putative
protein [Arabidopsis thaliana]
Length = 1113
Score = 176 bits (447), Expect = 1e-43
Identities = 87/144 (60%), Positives = 104/144 (71%), Gaps = 4/144 (2%)
Frame = -1
Query: 545 TAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKN 366
TA+GRG Y+K+IF + + TMKYVFWMTGSY HP GFDPKALP I+ I+YRD+ A+N
Sbjct: 968 TAIGRGGYIKDIFARRFTMKTMKYVFWMTGSYKLHPVGGFDPKALPEISNIHYRDMTAEN 1027
Query: 365 VTYPAKLEGIANDPFTGICISNANI--EKVGKKLAWNCTDVHGVTSNVSPEPCALLQEKP 192
VT AKLE I N PFTG+C+S+ I KKL WNCTDV GVTS V+PEPC+LL +K
Sbjct: 1028 VTISAKLERIKNGPFTGLCMSSVTIALSPDPKKLQWNCTDVSGVTSRVTPEPCSLLPDKR 1087
Query: 191 GKF--DCPFPSDKLPIESVQLKTC 126
DC FP+DK+PIESV L C
Sbjct: 1088 TTMDSDCDFPTDKIPIESVVLNKC 1111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,588,402
Number of Sequences: 1393205
Number of extensions: 9308359
Number of successful extensions: 25650
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 24967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25623
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
