Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018013A_C01 KMC018013A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, ... 47 2e-04
dbj|BAC42921.1| unknown protein [Arabidopsis thaliana] 47 2e-04
ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [... 36 0.25
emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum... 36 0.33
emb|CAC33010.1| S locus F-box (SLF)-S2 protein [Antirrhinum hisp... 33 2.1
>ref|NP_566277.1| F-box protein family; protein id: At3g06240.1, supported by cDNA:
108003. [Arabidopsis thaliana]
gi|6862928|gb|AAF30317.1|AC018907_17 hypothetical
protein [Arabidopsis thaliana]
gi|21536665|gb|AAM60997.1| unknown [Arabidopsis
thaliana]
Length = 416
Score = 46.6 bits (109), Expect = 2e-04
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = -1
Query: 535 AIHWVAQNFVAGRVTH-FIIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVH 359
AIHWV F R ++AFD+ + E+P P + F G L RL V
Sbjct: 263 AIHWV---FTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV 319
Query: 358 GRFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSSKLLYPLCSTKGGDIVM 200
+ + +IWVM +Y SW++ + L + + PLCSTK + V+
Sbjct: 320 NSCYDVHD------DIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVL 366
>dbj|BAC42921.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 46.6 bits (109), Expect = 2e-04
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = -1
Query: 535 AIHWVAQNFVAGRVTH-FIIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVH 359
AIHWV F R ++AFD+ + E+P P + F G L RL V
Sbjct: 274 AIHWV---FTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVV 330
Query: 358 GRFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSSKLLYPLCSTKGGDIVM 200
+ + +IWVM +Y SW++ + L + + PLCSTK + V+
Sbjct: 331 NSCYDVHD------DIWVMSEYGEAKSWSRIRINLLYRSMKPLCSTKNDEEVL 377
>ref|NP_192993.1| F-box protein family; protein id: At4g12560.1 [Arabidopsis
thaliana] gi|7487230|pir||T07648 hypothetical protein
T1P17.150 - Arabidopsis thaliana
gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis
thaliana] gi|7267958|emb|CAB78299.1| putative protein
[Arabidopsis thaliana]
Length = 408
Score = 36.2 bits (82), Expect = 0.25
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = -1
Query: 535 AIHWVAQNFVAGRVTHFIIAFDLM--EKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWV 362
++HWV + I+ FDL E ++ P+ + + D+ G L
Sbjct: 218 SLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDI---GVL------ 268
Query: 361 HGRFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSSK 245
G + + Q +++W+MK+Y V+ SWTK V K
Sbjct: 269 DGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPK 307
>emb|CAC33011.1| S locus F-box (SLF)-S2-like protein [Antirrhinum hispanicum]
Length = 376
Score = 35.8 bits (81), Expect = 0.33
Identities = 32/124 (25%), Positives = 50/124 (39%), Gaps = 8/124 (6%)
Frame = -1
Query: 535 AIHWVAQNFVAGRVTHFIIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQ--------GFL 380
A HW A N FI+ FD++ + E+ P L Q + F +
Sbjct: 222 AFHWNA-NSTDIFYADFILTFDIITEVFKEMAYPH---CLAQFSNSFLSLMSLNECLAMV 277
Query: 379 FYRLWVHGRFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSSKLLYPLCSTKGGDIVM 200
Y+ W+ + + +IWVMK+Y V+ SWTK V+ G +V+
Sbjct: 278 RYKEWME---------EPELFDIWVMKQYGVRESWTKQYVI-------------GPQVVV 315
Query: 199 CSGI 188
CS +
Sbjct: 316 CSHV 319
>emb|CAC33010.1| S locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
gi|13161540|emb|CAC33022.1| SLF-S2 protein [Antirrhinum
hispanicum]
Length = 376
Score = 33.1 bits (74), Expect = 2.1
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 8/124 (6%)
Frame = -1
Query: 535 AIHWVAQNFVAGRVTHFIIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQ--------GFL 380
A HW A N FI+ FD++ + E+ P L Q + F +
Sbjct: 222 AFHWNA-NSTDIFYADFILTFDIITEVFKEMAYPH---CLAQFSNSFLSLMSLNECLAMV 277
Query: 379 FYRLWVHGRFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSSKLLYPLCSTKGGDIVM 200
Y+ W+ + +IWVM +Y V+ SWTK V+ G +V+
Sbjct: 278 RYKEWME---------DPELFDIWVMNQYGVRESWTKQYVI-------------GPQVVV 315
Query: 199 CSGI 188
CS +
Sbjct: 316 CSHV 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,092,902
Number of Sequences: 1393205
Number of extensions: 10069866
Number of successful extensions: 22422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22408
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
