Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018010A_C01 KMC018010A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567456.1| Expressed protein; protein id: At4g15093.1 [Ara... 120 4e-27
dbj|BAC06208.1| P0018C10.9 [Oryza sativa (japonica cultivar-grou... 115 1e-25
dbj|BAC06209.1| P0018C10.10 [Oryza sativa (japonica cultivar-gro... 110 5e-24
pir||F71414 hypothetical protein - Arabidopsis thaliana gi|22448... 106 6e-23
ref|ZP_00066182.1| hypothetical protein [Microbulbifer degradans... 66 8e-11
>ref|NP_567456.1| Expressed protein; protein id: At4g15093.1 [Arabidopsis thaliana]
gi|15293029|gb|AAK93625.1| unknown protein [Arabidopsis
thaliana] gi|21436089|gb|AAM51245.1| unknown protein
[Arabidopsis thaliana] gi|26452573|dbj|BAC43371.1|
unknown protein [Arabidopsis thaliana]
Length = 269
Score = 120 bits (301), Expect = 4e-27
Identities = 50/81 (61%), Positives = 66/81 (80%)
Frame = -3
Query: 429 PPPWAVDFMSWLKSSLLHGRYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGENAKA 250
P PWA++F WL+ SLL GRY +VN++EEKAP AKMAHPWP+H +PLHV MGAAG +AKA
Sbjct: 187 PVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGGDAKA 246
Query: 249 KVVHDSWDGGSISYASFGFTA 187
+ +H SW G++SY+S+ FT+
Sbjct: 247 EQIHTSWQLGTLSYSSYSFTS 267
>dbj|BAC06208.1| P0018C10.9 [Oryza sativa (japonica cultivar-group)]
gi|22202675|dbj|BAC07333.1| P0471B04.17 [Oryza sativa
(japonica cultivar-group)]
Length = 266
Score = 115 bits (288), Expect = 1e-25
Identities = 48/82 (58%), Positives = 65/82 (78%)
Frame = -3
Query: 435 SPPPPWAVDFMSWLKSSLLHGRYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGENA 256
+P P WA +F WL+ +LL GR+++V +YEEKAP+ ++AHP PDHF PLHVA+GAAGE A
Sbjct: 181 TPVPQWAAEFDGWLQEALLGGRHDDVKRYEEKAPHGRVAHPSPDHFLPLHVALGAAGEGA 240
Query: 255 KAKVVHDSWDGGSISYASFGFT 190
KA+++H SW S+SYAS+ FT
Sbjct: 241 KAELIHRSWSNASLSYASYRFT 262
>dbj|BAC06209.1| P0018C10.10 [Oryza sativa (japonica cultivar-group)]
gi|22202676|dbj|BAC07334.1| P0471B04.18 [Oryza sativa
(japonica cultivar-group)]
Length = 280
Score = 110 bits (274), Expect = 5e-24
Identities = 49/83 (59%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Frame = -3
Query: 435 SPPPPWAVDFMSWLKSSLLHG-RYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGEN 259
+P P WA +F WL+ +LL G R+++V QYEEKAP KMAHP PDHF PLHVA+GAAGE+
Sbjct: 185 TPVPQWAAEFDGWLQEALLAGGRHDDVKQYEEKAPNGKMAHPSPDHFLPLHVALGAAGED 244
Query: 258 AKAKVVHDSWDGGSISYASFGFT 190
AKA+++H SW ++S+AS+ FT
Sbjct: 245 AKAELIHHSWYNATLSHASYRFT 267
>pir||F71414 hypothetical protein - Arabidopsis thaliana
gi|2244866|emb|CAB10288.1| hypothetical protein
[Arabidopsis thaliana] gi|7268255|emb|CAB78551.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1705
Score = 106 bits (265), Expect = 6e-23
Identities = 44/67 (65%), Positives = 55/67 (81%)
Frame = -3
Query: 429 PPPWAVDFMSWLKSSLLHGRYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGENAKA 250
P PWA++F WL+ SLL GRY +VN++EEKAP AKMAHPWP+H +PLHV MGAAG +AKA
Sbjct: 965 PVPWALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGGDAKA 1024
Query: 249 KVVHDSW 229
+ +H SW
Sbjct: 1025 EQIHTSW 1031
>ref|ZP_00066182.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 257
Score = 66.2 bits (160), Expect = 8e-11
Identities = 33/83 (39%), Positives = 50/83 (59%)
Frame = -3
Query: 441 RNSPPPPWAVDFMSWLKSSLLHGRYEEVNQYEEKAPYAKMAHPWPDHFFPLHVAMGAAGE 262
RN P WA +F+ WL ++ + Y + Q AP+A +AHP +H+ PL VA GAA
Sbjct: 175 RNGDTPIWAEEFVYWLHQAVTNKDYTALTQLYNSAPHAAIAHPTLEHYSPLLVAAGAAYG 234
Query: 261 NAKAKVVHDSWDGGSISYASFGF 193
N K +H+S++ GS++ +SF F
Sbjct: 235 NT-GKPIHNSYELGSLNNSSFSF 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,022,654
Number of Sequences: 1393205
Number of extensions: 8755916
Number of successful extensions: 20626
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 20065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20608
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
