Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018006A_C01 KMC018006A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_504367.1| Predicted CDS, putative membrane protein family... 34 1.3
sp|P09849|LPH_RABIT LACTASE-PHLORIZIN HYDROLASE PRECURSOR (LACTA... 26 6.4
emb|CAA81690.1| lactase-phlorizin hydrolase [Oryctolagus cuniculus] 26 6.4
pir||S43719 lactase (EC 3.2.1.108) / glycosylceramidase (EC 3.2.... 26 6.4
gb|AAO52295.1| similar to Dictyostelium discoideum (Slime mold).... 31 8.4
>ref|NP_504367.1| Predicted CDS, putative membrane protein family member, with at
least 4 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7495373|pir||T33768
hypothetical protein C04F5.5 - Caenorhabditis elegans
gi|9798118|gb|AAF98596.1| Hypothetical protein C04F5.5
[Caenorhabditis elegans]
Length = 342
Score = 33.9 bits (76), Expect = 1.3
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 155 SFLWRLI--IQIHLNDDFVFIFFNLSLIVNIKVECIYH*LSFFKII 24
+F W +I ++H N +F+ FN+S++V++ V I H F +
Sbjct: 40 NFAWLIIHETRLHFNSKCIFVTFNISVLVHVSVRIILHGKDFLNYV 85
>sp|P09849|LPH_RABIT LACTASE-PHLORIZIN HYDROLASE PRECURSOR (LACTASE-GLYCOSYLCERAMIDASE)
[INCLUDES: LACTASE ; PHLORIZIN HYDROLASE ]
gi|89934|pir||S01169 beta-glycosidase complex precursor -
rabbit gi|1617|emb|CAA30802.1| lactase phlorizin
hydrolase [Oryctolagus cuniculus]
Length = 1926
Score = 25.8 bits (55), Expect(2) = 6.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 540 KKEYGHFPVYIRENGV 493
K+EY + P+Y+ ENGV
Sbjct: 1735 KEEYNNPPIYVTENGV 1750
Score = 24.3 bits (51), Expect(2) = 6.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 463 TQRRNSSLDDLTRVKFLREYLGSLVDVLSFSRRD 362
+ R +S L+D TR+ +LR Y+ + + + D
Sbjct: 1751 SHRGDSYLNDTTRIYYLRSYINEALKAVQQDKVD 1784
>emb|CAA81690.1| lactase-phlorizin hydrolase [Oryctolagus cuniculus]
Length = 1919
Score = 25.8 bits (55), Expect(2) = 6.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 540 KKEYGHFPVYIRENGV 493
K+EY + P+Y+ ENGV
Sbjct: 1728 KEEYNNPPIYVTENGV 1743
Score = 24.3 bits (51), Expect(2) = 6.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 463 TQRRNSSLDDLTRVKFLREYLGSLVDVLSFSRRD 362
+ R +S L+D TR+ +LR Y+ + + + D
Sbjct: 1744 SHRGDSYLNDTTRIYYLRSYINEALKAVQQDKVD 1777
>pir||S43719 lactase (EC 3.2.1.108) / glycosylceramidase (EC 3.2.1.62) (clone
BL20) - rabbit (fragment)
Length = 1918
Score = 25.8 bits (55), Expect(2) = 6.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 540 KKEYGHFPVYIRENGV 493
K+EY + P+Y+ ENGV
Sbjct: 1727 KEEYNNPPIYVTENGV 1742
Score = 24.3 bits (51), Expect(2) = 6.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 463 TQRRNSSLDDLTRVKFLREYLGSLVDVLSFSRRD 362
+ R +S L+D TR+ +LR Y+ + + + D
Sbjct: 1743 SHRGDSYLNDTTRIYYLRSYINEALKAVQQDKVD 1776
>gb|AAO52295.1| similar to Dictyostelium discoideum (Slime mold). Conditioned
medium factor (CMF) (Density-sensing factor)
Length = 699
Score = 31.2 bits (69), Expect = 8.4
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Frame = -2
Query: 233 PPPFFA*QVSPSYCFGPK*SKPILISSFLWRLIIQIHLNDDFVFIFFNLSLIVNIKVEC- 57
P P Q S S FG ++ L +SF W ++ + ++F FF+ + KVE
Sbjct: 38 PNPMDVAQSSDSSLFGISMTQSQLKNSFEWSGVVPVDSEEEFTLTFFSSFPLSEFKVEAS 97
Query: 56 -----------IYH*LSFFKIIRNTY 12
H F+K+I++ Y
Sbjct: 98 PKTSLSSSKSESEHKSKFYKVIKSIY 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,653,476
Number of Sequences: 1393205
Number of extensions: 9115640
Number of successful extensions: 15027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15026
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
