Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018002A_C01 KMC018002A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192387.1| hypothetical protein; protein id: At4g04780.1 [... 74 1e-12
gb|AAO22731.1| unknown protein [Arabidopsis thaliana] 74 1e-12
gb|AAL73528.1|AF466200_7 putative RNA polymerase II complex comp... 61 1e-08
gb|AAD03443.1| contains similarity to human RNA polymerase II co... 36 0.28
emb|CAC05407.1| maturase [Williamodendron glaucophyllum] 35 0.62
>ref|NP_192387.1| hypothetical protein; protein id: At4g04780.1 [Arabidopsis
thaliana] gi|25407290|pir||B85060 hypothetical protein
AT4g04780 [imported] - Arabidopsis thaliana
gi|7267236|emb|CAB80843.1| hypothetical protein
[Arabidopsis thaliana]
Length = 381
Score = 73.9 bits (180), Expect = 1e-12
Identities = 34/41 (82%), Positives = 38/41 (91%)
Frame = -1
Query: 554 ENDAIGQELQKQLEAAEKELHQVQELFSQASDNCLNLKKPD 432
END +GQELQKQLEAAEKEL QVQELF QA+DNCLN+KKP+
Sbjct: 341 ENDLVGQELQKQLEAAEKELKQVQELFGQAADNCLNMKKPE 381
>gb|AAO22731.1| unknown protein [Arabidopsis thaliana]
Length = 162
Score = 73.9 bits (180), Expect = 1e-12
Identities = 34/41 (82%), Positives = 38/41 (91%)
Frame = -1
Query: 554 ENDAIGQELQKQLEAAEKELHQVQELFSQASDNCLNLKKPD 432
END +GQELQKQLEAAEKEL QVQELF QA+DNCLN+KKP+
Sbjct: 122 ENDLVGQELQKQLEAAEKELKQVQELFGQAADNCLNMKKPE 162
>gb|AAL73528.1|AF466200_7 putative RNA polymerase II complex component SRB7 protein [Sorghum
bicolor]
Length = 159
Score = 60.8 bits (146), Expect = 1e-08
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1
Query: 557 AENDAIGQELQKQLEAAEKELHQVQELFSQASDNCLNLKKPD 432
AEN+ +G ELQKQLEAAE+EL QV+ LF++A+DNC+N K+ D
Sbjct: 118 AENEVVGLELQKQLEAAERELKQVEVLFNEATDNCINFKRLD 159
>gb|AAD03443.1| contains similarity to human RNA polymerase II complex component
SRB7 (GB:U52960) [Arabidopsis thaliana]
Length = 168
Score = 36.2 bits (82), Expect = 0.28
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -1
Query: 554 ENDAIGQELQKQLEAAEKELHQVQEL 477
END +GQELQKQLEAAE + +V E+
Sbjct: 108 ENDLVGQELQKQLEAAEGAVAKVAEV 133
>emb|CAC05407.1| maturase [Williamodendron glaucophyllum]
Length = 355
Score = 35.0 bits (79), Expect = 0.62
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 119 QTMHD*VNDT*IKHLKSFT-QELSRYKMIQTPKSNIKPFLREEQYNYHYLNGGLFLKRSY 295
QT+H + DT + HL F+ E + TPK++I PF +E Q + LFL S+
Sbjct: 12 QTLHSWIQDTPLLHLLQFSLYEYWNSNSLITPKNSISPFSKENQRFF------LFLSNSH 65
Query: 296 SY 301
Y
Sbjct: 66 VY 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,836,064
Number of Sequences: 1393205
Number of extensions: 8934935
Number of successful extensions: 25151
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25140
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
