Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017998A_C01 KMC017998A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197367.1| putative protein; protein id: At5g18660.1, supp... 214 1e-54
dbj|BAC41829.1| unknown protein [Arabidopsis thaliana] 211 7e-54
gb|AAM62911.1| unknown [Arabidopsis thaliana] 211 9e-54
ref|ZP_00115291.1| hypothetical protein [Synechococcus sp. WH 8102] 160 1e-38
ref|NP_661954.1| conserved hypothetical protein [Chlorobium tepi... 140 1e-32
>ref|NP_197367.1| putative protein; protein id: At5g18660.1, supported by cDNA:
17121. [Arabidopsis thaliana]
Length = 417
Score = 214 bits (544), Expect = 1e-54
Identities = 102/125 (81%), Positives = 116/125 (92%)
Frame = -2
Query: 655 VLSEDKINKVLPIGGPGKALTPLEQGEMLFKLVGKKPNFLKVPIGIMDFAIGVLDNLVKV 476
VL E+KIN+VLPIGGPGKALTPLEQGE+LFK++G++P FLKVPI IMDF IGVLD++ K+
Sbjct: 291 VLEENKINQVLPIGGPGKALTPLEQGEILFKILGREPKFLKVPIEIMDFVIGVLDSIAKI 350
Query: 475 FPSLEDAAEFGKIGRYYAVESMLILDPETGEYSAEKTPSYGNDTLEDFFARVLREGMAGQ 296
FPS+ +AAEFGKIGRYYA ESMLILDPETGEYS EKTPSYG DTLEDFFA+V+REGMAGQ
Sbjct: 351 FPSVGEAAEFGKIGRYYAAESMLILDPETGEYSEEKTPSYGKDTLEDFFAKVIREGMAGQ 410
Query: 295 ELGEQ 281
ELGEQ
Sbjct: 411 ELGEQ 415
>dbj|BAC41829.1| unknown protein [Arabidopsis thaliana]
Length = 417
Score = 211 bits (537), Expect = 7e-54
Identities = 101/125 (80%), Positives = 115/125 (91%)
Frame = -2
Query: 655 VLSEDKINKVLPIGGPGKALTPLEQGEMLFKLVGKKPNFLKVPIGIMDFAIGVLDNLVKV 476
VL E+KIN+VLPIGGPGKALTPLEQGE+LFK++G++P FLKVPI IMDF IGVLD++ K+
Sbjct: 291 VLEENKINQVLPIGGPGKALTPLEQGEILFKILGREPKFLKVPIEIMDFVIGVLDSIAKI 350
Query: 475 FPSLEDAAEFGKIGRYYAVESMLILDPETGEYSAEKTPSYGNDTLEDFFARVLREGMAGQ 296
FPS+ +AAEFGKIGRYYA ESMLILDPETG YS EKTPSYG DTLEDFFA+V+REGMAGQ
Sbjct: 351 FPSVGEAAEFGKIGRYYAAESMLILDPETGGYSEEKTPSYGKDTLEDFFAKVIREGMAGQ 410
Query: 295 ELGEQ 281
ELGEQ
Sbjct: 411 ELGEQ 415
>gb|AAM62911.1| unknown [Arabidopsis thaliana]
Length = 417
Score = 211 bits (536), Expect = 9e-54
Identities = 101/125 (80%), Positives = 115/125 (91%)
Frame = -2
Query: 655 VLSEDKINKVLPIGGPGKALTPLEQGEMLFKLVGKKPNFLKVPIGIMDFAIGVLDNLVKV 476
VL E+KIN+VLPIGGPGKALTPLEQGE+LFK++G++P FLKVPI IMDF IGVLD++ K+
Sbjct: 291 VLEENKINQVLPIGGPGKALTPLEQGEILFKILGREPKFLKVPIEIMDFVIGVLDSIAKI 350
Query: 475 FPSLEDAAEFGKIGRYYAVESMLILDPETGEYSAEKTPSYGNDTLEDFFARVLREGMAGQ 296
FPS+ +AAEFGKIGRYYA ESMLILDPET EYS EKTPSYG DTLEDFFA+V+REGMAGQ
Sbjct: 351 FPSVGEAAEFGKIGRYYAAESMLILDPETEEYSEEKTPSYGKDTLEDFFAKVIREGMAGQ 410
Query: 295 ELGEQ 281
ELGEQ
Sbjct: 411 ELGEQ 415
>ref|ZP_00115291.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 378
Score = 160 bits (406), Expect = 1e-38
Identities = 76/125 (60%), Positives = 96/125 (76%)
Frame = -2
Query: 646 EDKINKVLPIGGPGKALTPLEQGEMLFKLVGKKPNFLKVPIGIMDFAIGVLDNLVKVFPS 467
EDK N+VLPIGGPG AL+ +QGEMLF+ +G+ P L VPI +MD I +L+ L ++FP
Sbjct: 254 EDKRNQVLPIGGPGPALSAKQQGEMLFRALGRPPRMLSVPIALMDGPIALLEGLSRLFPG 313
Query: 466 LEDAAEFGKIGRYYAVESMLILDPETGEYSAEKTPSYGNDTLEDFFARVLREGMAGQELG 287
L+D AEFG+IGRYYA ESML+ DPE Y A+ TPSYG DTLE FF RV+R+GMAGQ+LG
Sbjct: 314 LQDTAEFGRIGRYYAAESMLVWDPERQCYDADATPSYGEDTLERFFERVVRDGMAGQDLG 373
Query: 286 EQIMF 272
+ +F
Sbjct: 374 DAALF 378
>ref|NP_661954.1| conserved hypothetical protein [Chlorobium tepidum TLS]
gi|21647026|gb|AAM72296.1| conserved hypothetical
protein [Chlorobium tepidum TLS]
Length = 344
Score = 140 bits (354), Expect = 1e-32
Identities = 68/124 (54%), Positives = 87/124 (69%)
Frame = -2
Query: 643 DKINKVLPIGGPGKALTPLEQGEMLFKLVGKKPNFLKVPIGIMDFAIGVLDNLVKVFPSL 464
+K NK+LPIGGPG+ +T L+Q MLF+L+G+KP KVPI I D I +L + K PS
Sbjct: 221 EKQNKILPIGGPGEPVTNLDQALMLFELLGRKPKLKKVPIQIFDVIIPLLTLISKFLPSF 280
Query: 463 EDAAEFGKIGRYYAVESMLILDPETGEYSAEKTPSYGNDTLEDFFARVLREGMAGQELGE 284
+ AEF +IG+YY ESML+ DP Y A+ TPSYG +TL DF+ RVL+EG+AGQELG
Sbjct: 281 AEKAEFARIGKYYCSESMLVWDPVKKRYDADATPSYGTETLRDFYKRVLKEGLAGQELGA 340
Query: 283 QIMF 272
MF
Sbjct: 341 HAMF 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,182,613
Number of Sequences: 1393205
Number of extensions: 13252480
Number of successful extensions: 37053
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 35751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37000
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
