Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017997A_C01 KMC017997A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA86060.1| senescencs-related protein [Pyrus pyrifolia] 220 8e-57
gb|AAN64920.1| putative dehydrogenase [Lycopersicon esculentum] 209 2e-53
ref|NP_188408.1| dehydrogenase, putative; protein id: At3g17810.... 201 6e-51
ref|NP_697316.1| dihydroorotate dehydrogenase family protein [Br... 80 2e-14
ref|NP_540556.1| DIHYDROPYRIMIDINE DEHYDROGENASE (NADP+) [Brucel... 80 2e-14
>dbj|BAA86060.1| senescencs-related protein [Pyrus pyrifolia]
Length = 424
Score = 220 bits (561), Expect = 8e-57
Identities = 115/149 (77%), Positives = 126/149 (84%), Gaps = 1/149 (0%)
Frame = +1
Query: 85 MASLSMTQVRTGKSASGFSLNCPGKVQ-ARPSRVGFRVFASEAQVPEPDLSVTVNGLHMP 261
MAS+S TQ+ + FS +V+ RPSRVGFRVFASE++ EPDLSVTVNGLHMP
Sbjct: 1 MASISFTQIGGKNPVAEFSRRPRPEVRLTRPSRVGFRVFASESKA-EPDLSVTVNGLHMP 59
Query: 262 NPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRAGANGSAKG 441
NPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSL+A KV NVTPRYARLR NGSAKG
Sbjct: 60 NPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLEADKVKNVTPRYARLRVDGNGSAKG 119
Query: 442 EIIGWENIELISDRPLETMLKEFKQLKEE 528
+IIGWENIELISDRPL+ MLKEFKQLK+E
Sbjct: 120 QIIGWENIELISDRPLDIMLKEFKQLKQE 148
>gb|AAN64920.1| putative dehydrogenase [Lycopersicon esculentum]
Length = 429
Score = 209 bits (532), Expect = 2e-53
Identities = 112/153 (73%), Positives = 122/153 (79%), Gaps = 5/153 (3%)
Frame = +1
Query: 85 MASLSMTQ-VRTGKSA-SGFS---LNCPGKVQARPSRVGFRVFASEAQVPEPDLSVTVNG 249
MASL + Q +R G SG + G++ RVGFR+ A E Q EPDLSVTVNG
Sbjct: 1 MASLGLAQRIRIGLDGNSGVENPVMGRAGRLNFGRKRVGFRIMALEGQSVEPDLSVTVNG 60
Query: 250 LHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRAGANG 429
L MPNPFVIGSGPPGTNYTVMKRAFDEGWG VIAKTVSL+A KV NVTPRYA+LRA ANG
Sbjct: 61 LKMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLEADKVKNVTPRYAKLRADANG 120
Query: 430 SAKGEIIGWENIELISDRPLETMLKEFKQLKEE 528
SAKG+IIGW+NIELISDRPLETMLKEFKQLKEE
Sbjct: 121 SAKGQIIGWQNIELISDRPLETMLKEFKQLKEE 153
>ref|NP_188408.1| dehydrogenase, putative; protein id: At3g17810.1, supported by
cDNA: gi_14334711, supported by cDNA: gi_16323429
[Arabidopsis thaliana] gi|9294485|dbj|BAB02704.1|
senescencs-related protein; dihydroorotate
dehydrogenase-like protein [Arabidopsis thaliana]
gi|14334712|gb|AAK59534.1| putative dehydrogenase
[Arabidopsis thaliana] gi|16323430|gb|AAL15209.1|
putative dehydrogenase [Arabidopsis thaliana]
gi|24850451|gb|AAN64919.1| putative dehydrogenase
[Arabidopsis thaliana]
Length = 426
Score = 201 bits (510), Expect = 6e-51
Identities = 106/153 (69%), Positives = 122/153 (79%), Gaps = 5/153 (3%)
Frame = +1
Query: 85 MASLSMTQVRTGKSASGFSLNCPGKVQAR-----PSRVGFRVFASEAQVPEPDLSVTVNG 249
MAS+S R +S +L+ +R P+RVG ++ S A EPDLSVTVNG
Sbjct: 1 MASMSFALNRFSGLSSKTTLSADFDPSSRRSFLPPTRVGLKI--SSAAESEPDLSVTVNG 58
Query: 250 LHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVTPRYARLRAGANG 429
L MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDA+KVINVTPRYARLR G+NG
Sbjct: 59 LKMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLRTGSNG 118
Query: 430 SAKGEIIGWENIELISDRPLETMLKEFKQLKEE 528
SAK ++IGW+NIELISDRPLETMLKEF++LK+E
Sbjct: 119 SAKTDVIGWQNIELISDRPLETMLKEFERLKKE 151
>ref|NP_697316.1| dihydroorotate dehydrogenase family protein [Brucella suis 1330]
gi|23347067|gb|AAN29231.1|AE014340_9 dihydroorotate
dehydrogenase family protein [Brucella suis 1330]
Length = 436
Score = 79.7 bits (195), Expect = 2e-14
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 DLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVT-PRY 402
DLS G+ PNPF + S PP ++RAF GWG V+ KT+ + V+NV PRY
Sbjct: 3 DLSTNFLGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGAEGPPVVNVNDPRY 62
Query: 403 ARLRAGANGSAKGEIIGWENIELISDRPLETMLKEFKQLK 522
GA A ++G NIELI+DRPLE L+E K++K
Sbjct: 63 -----GAIHGADRRLLGLNNIELITDRPLEINLREMKEVK 97
>ref|NP_540556.1| DIHYDROPYRIMIDINE DEHYDROGENASE (NADP+) [Brucella melitensis]
gi|25529497|pir||AI3456 dihydropyrimidine dehydrogenase
(NADP) (EC 1.3.1.2) [imported] - Brucella melitensis
(strain 16M) gi|17983659|gb|AAL52820.1|
DIHYDROPYRIMIDINE DEHYDROGENASE (NADP+) [Brucella
melitensis 16M]
Length = 436
Score = 79.7 bits (195), Expect = 2e-14
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +1
Query: 226 DLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINVT-PRY 402
DLS G+ PNPF + S PP ++RAF GWG V+ KT+ + V+NV PRY
Sbjct: 3 DLSTNFLGIKSPNPFWLASAPPTDKAYNVERAFKAGWGGVVWKTLGAEGPPVVNVNGPRY 62
Query: 403 ARLRAGANGSAKGEIIGWENIELISDRPLETMLKEFKQLK 522
GA A ++G NIELI+DRPLE L+E K++K
Sbjct: 63 -----GAIHGADRRLLGLNNIELITDRPLEINLREMKEVK 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,064,369
Number of Sequences: 1393205
Number of extensions: 11857814
Number of successful extensions: 29032
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 27989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28985
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
