Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017992A_C01 KMC017992A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190998.1| synaptobrevin -like protein; protein id: At3g54... 68 9e-11
gb|AAA56991.1| formerly called HAT24; synaptobrevin-related protein 57 2e-07
ref|NP_180871.1| putative synaptobrevin; protein id: At2g33120.1... 57 2e-07
pir||E86180 hypothetical protein [imported] - Arabidopsis thalia... 57 2e-07
sp|Q9MAS5|V726_ARATH Putative vesicle-associated membrane protei... 56 3e-07
>ref|NP_190998.1| synaptobrevin -like protein; protein id: At3g54300.1 [Arabidopsis
thaliana] gi|27805764|sp|Q9M376|V727_ARATH
Vesicle-associated membrane protein 727 (AtVAMP727)
gi|11358869|pir||T47589 synaptobrevin-like protein -
Arabidopsis thaliana gi|6822076|emb|CAB71004.1|
synaptobrevin-like protein [Arabidopsis thaliana]
Length = 240
Score = 67.8 bits (164), Expect = 9e-11
Identities = 29/33 (87%), Positives = 30/33 (90%)
Frame = -1
Query: 344 TIVVQCFQKLPSNCSKYTYSCDGHTFNFLVDNG 246
TI VQC QKLP+N SKYTYSCDGHTFNFLVDNG
Sbjct: 30 TIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNG 62
>gb|AAA56991.1| formerly called HAT24; synaptobrevin-related protein
Length = 221
Score = 56.6 bits (135), Expect = 2e-07
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -1
Query: 344 TIVVQCFQKLPSNCSKYTYSCDGHTFNFLVDNG 246
+I QC QKLPS+ +K+TY+CDGHTFN+LV+NG
Sbjct: 30 SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENG 62
>ref|NP_180871.1| putative synaptobrevin; protein id: At2g33120.1, supported by cDNA:
2443., supported by cDNA: gi_16930420, supported by
cDNA: gi_18252974, supported by cDNA: gi_18958027,
supported by cDNA: gi_600709 [Arabidopsis thaliana]
gi|21542460|sp|P47192|V722_ARATH Vesicle-associated
membrane protein 722 (AtVAMP722) (Synaptobrevin-related
protein 1) gi|25408247|pir||F84741 probable
synaptobrevin [imported] - Arabidopsis thaliana
gi|2924792|gb|AAC04921.1| putative synaptobrevin
[Arabidopsis thaliana]
gi|16930421|gb|AAL31896.1|AF419564_1 At2g33120/F25I18.14
[Arabidopsis thaliana] gi|18252975|gb|AAL62414.1|
putative synaptobrevin [Arabidopsis thaliana]
gi|18958028|gb|AAL79587.1| At2g33120/F25I18.14
[Arabidopsis thaliana] gi|21389653|gb|AAM48025.1|
putative synaptobrevin [Arabidopsis thaliana]
gi|21592481|gb|AAM64431.1| putative synaptobrevin
[Arabidopsis thaliana] gi|22135820|gb|AAM91096.1|
At2g33120/F25I18.14 [Arabidopsis thaliana]
Length = 221
Score = 56.6 bits (135), Expect = 2e-07
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -1
Query: 344 TIVVQCFQKLPSNCSKYTYSCDGHTFNFLVDNG 246
+I QC QKLPS+ +K+TY+CDGHTFN+LV+NG
Sbjct: 30 SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENG 62
>pir||E86180 hypothetical protein [imported] - Arabidopsis thaliana
gi|7211997|gb|AAF40468.1|AC004809_26 Contains similarity
to the synaptobrevin-related protein (SAR1) gb|M901418.
ESTs gb|T44122 and gb|AA067474 come from this gene.
[Arabidopsis thaliana]
Length = 69
Score = 56.6 bits (135), Expect = 2e-07
Identities = 22/38 (57%), Positives = 31/38 (80%)
Frame = -1
Query: 344 TIVVQCFQKLPSNCSKYTYSCDGHTFNFLVDNGLANKL 231
+I QC QKLPS+ +K+TY+CDGHTFN+LV++G + L
Sbjct: 30 SIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFSKSL 67
>sp|Q9MAS5|V726_ARATH Putative vesicle-associated membrane protein 726 (AtVAMP726)
gi|25406810|pir||F86180 hypothetical protein [imported]
- Arabidopsis thaliana
gi|7211989|gb|AAF40460.1|AC004809_18 Strong similarity
to the synaptobrevin homolog F25I18.14 gi|2924792 from
A. thaliana on BAC gb|AC002334. [Arabidopsis thaliana]
Length = 229
Score = 56.2 bits (134), Expect = 3e-07
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = -1
Query: 344 TIVVQCFQKLPSNCSKYTYSCDGHTFNFLVDNG 246
++ QC QKLPS+ +K+TY+CDGHTFN+L DNG
Sbjct: 30 SVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNG 62
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,972,635
Number of Sequences: 1393205
Number of extensions: 8870351
Number of successful extensions: 19951
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 19489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19945
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
