Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017990A_C01 KMC017990A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175525.1| hypothetical protein; protein id: At1g51130.1 [... 55 7e-07
dbj|BAA82392.1| EST AU030111(E50640) corresponds to a region of ... 39 0.043
ref|XP_143263.1| similar to crumbs homolog 1 [Mus musculus] 32 4.0
ref|XP_221212.1| similar to Interleukin enhancer-binding factor ... 32 6.8
dbj|BAC31044.1| unnamed protein product [Mus musculus] 32 6.8
>ref|NP_175525.1| hypothetical protein; protein id: At1g51130.1 [Arabidopsis
thaliana] gi|25373272|pir||G96548 hypothetical protein
F23H24.4 [imported] - Arabidopsis thaliana
gi|12320790|gb|AAG50545.1|AC079828_16 hypothetical
protein [Arabidopsis thaliana]
gi|28393397|gb|AAO42122.1| unknown protein [Arabidopsis
thaliana]
Length = 403
Score = 54.7 bits (130), Expect = 7e-07
Identities = 34/82 (41%), Positives = 47/82 (56%)
Frame = -2
Query: 555 GKELMPHRIQVCTEDAQEEMGGGDHSQAALAVSPIRAITPIRKLNRNRGRVVQEESIVQE 376
G+ELMPHR + + A+ + TPIRKL+RNRG VVQEE++V++
Sbjct: 328 GEELMPHRQTAVASSSCPAAS----APASADFTQDTQTTPIRKLSRNRGLVVQEETVVED 383
Query: 375 SPECDKENDPGAAAIRRCKRKI 310
+P DKE D RRCKR++
Sbjct: 384 TP--DKEGD---GTRRRCKRRL 400
>dbj|BAA82392.1| EST AU030111(E50640) corresponds to a region of the predicted
gene.~hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 175
Score = 38.9 bits (89), Expect = 0.043
Identities = 28/64 (43%), Positives = 36/64 (55%), Gaps = 1/64 (1%)
Frame = -2
Query: 555 GKELMPHRIQVCTEDAQEEMGGGDHSQAALAVSPIRAITPIRKLNRNRGRVVQEES-IVQ 379
G+ELMPHR A+ DH QA + TPIRKL RNRG V+Q++ +V
Sbjct: 102 GEELMPHRNPENIPCAE------DHDQADPPELCAQR-TPIRKLTRNRGLVMQQDQMVVA 154
Query: 378 ESPE 367
E+PE
Sbjct: 155 ETPE 158
>ref|XP_143263.1| similar to crumbs homolog 1 [Mus musculus]
Length = 147
Score = 32.3 bits (72), Expect = 4.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 213 TTQKLSSTC*TKYNP*FSKCKVDLVPNLLILDGSYACTCG*QQLQDHFPYHIQEILEQ 386
TT + C +Y+ +C++ + L L GSY C C L DH ++ E Q
Sbjct: 22 TTPLQAELCPQEYSGVNCECEIGACGSHLCLHGSYICDCALGSLGDHCDFNFDECSSQ 79
>ref|XP_221212.1| similar to Interleukin enhancer-binding factor 1 (Cellular
transcription factor ILF-1) [Rattus norvegicus]
Length = 935
Score = 31.6 bits (70), Expect = 6.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = -2
Query: 504 EEMGGGDHSQAALAVSPIRAITPI------RKLNRNRGRVVQEESIVQESP 370
E GDH + + V P+ AI+P R + ++G VQ +IVQ++P
Sbjct: 789 EPQENGDHREVRVKVEPVPAISPATLGAASRIIQTSQGTPVQTVTIVQQAP 839
>dbj|BAC31044.1| unnamed protein product [Mus musculus]
Length = 359
Score = 31.6 bits (70), Expect = 6.8
Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 4/59 (6%)
Frame = -3
Query: 518 LRMLRKRWVVATIPKQLWLYHLSEL----*HLSGS*IGTEGGLCRRKALFKNLLNVIRK 354
+R +RKRW + TI + L Y E+ H IG +G LC ++L + +IRK
Sbjct: 1 MRSIRKRWTICTISQLLIFYKTKEIARTEEHQETQLIG-DGELCLSRSLVNSSDKIIRK 58
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,105,226
Number of Sequences: 1393205
Number of extensions: 9832148
Number of successful extensions: 22167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22159
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
