Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017980A_C01 KMC017980A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK57515.1|AF380176_1 HBV pX associated protein 8 large isofo... 32 3.4
ref|NP_057662.2| HBV pX associated protein-8; hepatitis B virus-... 32 3.4
gb|AAH46124.1| Similar to hepatitis B virus x associated protein... 32 3.4
>gb|AAK57515.1|AF380176_1 HBV pX associated protein 8 large isoform [Homo sapiens]
Length = 1431
Score = 32.3 bits (72), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +1
Query: 166 LEKPLTAN*EKSILKENNSSFTISIKNFKLRL 261
LEKPL N EK I+KE + SF ++K K+ +
Sbjct: 285 LEKPLPENEEKKIIKEESDSFKENVKPIKVEV 316
>ref|NP_057662.2| HBV pX associated protein-8; hepatitis B virus-associated protein
[Homo sapiens] gi|10803733|gb|AAF61709.2|AF227948_1 HBV
pX associated protein-8; XAP-8 [Homo sapiens]
Length = 1189
Score = 32.3 bits (72), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +1
Query: 166 LEKPLTAN*EKSILKENNSSFTISIKNFKLRL 261
LEKPL N EK I+KE + SF ++K K+ +
Sbjct: 43 LEKPLPENEEKKIIKEESDSFKENVKPIKVEV 74
>gb|AAH46124.1| Similar to hepatitis B virus x associated protein [Homo sapiens]
Length = 752
Score = 32.3 bits (72), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +1
Query: 166 LEKPLTAN*EKSILKENNSSFTISIKNFKLRL 261
LEKPL N EK I+KE + SF ++K K+ +
Sbjct: 43 LEKPLPENEEKKIIKEESDSFKENVKPIKVEV 74
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,812,008
Number of Sequences: 1393205
Number of extensions: 7340645
Number of successful extensions: 16532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16438
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
