Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017977A_C01 KMC017977A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O24111|RS5_NICPL 40S RIBOSOMAL PROTEIN S5 gi|7440226|pir||T16... 202 3e-51
sp|O65731|RS5_CICAR 40S RIBOSOMAL PROTEIN S5 gi|3043428|emb|CAA0... 201 7e-51
ref|NP_181264.1| 40S ribosomal protein S5; protein id: At2g37270... 201 7e-51
ref|NP_187800.1| 40S ribosomal protein S5, putative; protein id:... 200 1e-50
dbj|BAB62621.1| putative 40S ribosomal protein S5 [Oryza sativa ... 200 1e-50
>sp|O24111|RS5_NICPL 40S RIBOSOMAL PROTEIN S5 gi|7440226|pir||T16965 ribosomal protein
S5 - curled-leaved tobacco gi|1620982|emb|CAA70084.1|
40S ribosomal protein S5 [Nicotiana plumbaginifolia]
Length = 154
Score = 202 bits (513), Expect = 3e-51
Identities = 105/109 (96%), Positives = 109/109 (99%)
Frame = -3
Query: 566 AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 387
AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLT
Sbjct: 46 AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLT 105
Query: 386 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAQAHR 240
TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA+A+R
Sbjct: 106 TGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154
>sp|O65731|RS5_CICAR 40S RIBOSOMAL PROTEIN S5 gi|3043428|emb|CAA06491.1| 40S ribosomal
protein S5 [Cicer arietinum]
Length = 197
Score = 201 bits (510), Expect = 7e-51
Identities = 104/109 (95%), Positives = 108/109 (98%)
Frame = -3
Query: 566 AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 387
AMEIIHLLTD NPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT
Sbjct: 89 AMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 148
Query: 386 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAQAHR 240
TGAREAAFRNIK+IAECLADELINAAKGSSNSYAIKKKDEIERVA+A+R
Sbjct: 149 TGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
>ref|NP_181264.1| 40S ribosomal protein S5; protein id: At2g37270.1, supported by
cDNA: 8397., supported by cDNA: gi_16648958, supported
by cDNA: gi_20148680 [Arabidopsis thaliana]
gi|27734544|sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein
S5-1 gi|25294563|pir||F84790 40S ribosomal protein S5
[imported] - Arabidopsis thaliana
gi|4056502|gb|AAC98068.1| 40S ribosomal protein S5
[Arabidopsis thaliana] gi|16648959|gb|AAL24331.1| 40S
ribosomal protein S5 [Arabidopsis thaliana]
gi|20148681|gb|AAM10231.1| 40S ribosomal protein S5
[Arabidopsis thaliana]
Length = 207
Score = 201 bits (510), Expect = 7e-51
Identities = 102/109 (93%), Positives = 109/109 (99%)
Frame = -3
Query: 566 AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 387
AMEIIHLL+DLNPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLT
Sbjct: 99 AMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLT 158
Query: 386 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAQAHR 240
TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA+A+R
Sbjct: 159 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>ref|NP_187800.1| 40S ribosomal protein S5, putative; protein id: At3g11940.1,
supported by cDNA: 29782., supported by cDNA:
gi_15027978, supported by cDNA: gi_20259198 [Arabidopsis
thaliana] gi|27735255|sp|P51427|RS5B_ARATH 40S ribosomal
protein S5-2 gi|6671950|gb|AAF23210.1|AC016795_23
putative 40S ribosomal protein S5 [Arabidopsis thaliana]
gi|10998132|dbj|BAB03103.1| 40S ribosomal protein
S5-like [Arabidopsis thaliana]
gi|15027979|gb|AAK76520.1| putative 40S ribosomal
protein S5 [Arabidopsis thaliana]
gi|20259199|gb|AAM14315.1| putative 40S ribosomal
protein S5 [Arabidopsis thaliana]
gi|21592553|gb|AAM64502.1| 40S ribosomal protein S5,
putative [Arabidopsis thaliana]
Length = 207
Score = 200 bits (508), Expect = 1e-50
Identities = 101/109 (92%), Positives = 109/109 (99%)
Frame = -3
Query: 566 AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 387
AMEIIHLL+DLNPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+T
Sbjct: 99 AMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLIT 158
Query: 386 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAQAHR 240
TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA+A+R
Sbjct: 159 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>dbj|BAB62621.1| putative 40S ribosomal protein S5 [Oryza sativa (japonica
cultivar-group)] gi|15408845|dbj|BAB64234.1| putative
40S ribosomal protein S5 [Oryza sativa (japonica
cultivar-group)]
Length = 200
Score = 200 bits (508), Expect = 1e-50
Identities = 103/109 (94%), Positives = 107/109 (97%)
Frame = -3
Query: 566 AMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 387
AMEIIHLLTD NPIQVIVDA+INSGPREDATRIGSAG VRRQAVDISPLRRVNQAIYLLT
Sbjct: 92 AMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAIYLLT 151
Query: 386 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAQAHR 240
TGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVA+A+R
Sbjct: 152 TGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,152,480
Number of Sequences: 1393205
Number of extensions: 8933862
Number of successful extensions: 24072
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 23313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24052
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
