Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017972A_C01 KMC017972A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700609.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.15
gb|EAA18442.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.26
gb|EAA19866.1| asparagine-rich protein [Plasmodium yoelii yoelii] 35 0.58
gb|AAH46668.1| Similar to splicing factor, arginine/serine-rich ... 35 0.76
gb|AAH32191.1| Unknown (protein for MGC:36411) [Mus musculus] 34 0.99
>ref|NP_700609.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495000|gb|AAN35333.1|AE014831_9 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 491
Score = 37.0 bits (84), Expect = 0.15
Identities = 29/139 (20%), Positives = 63/139 (44%), Gaps = 4/139 (2%)
Frame = +3
Query: 90 RNQSRSKKKIRKLNTRKNFSQKQIKTETQNHKRGLKTVNSIEQQRTSFKSK*SASPDYGK 269
+ + + K+K ++ N +KN + K IK +HK + E + +K + + +
Sbjct: 233 KEKKKKKEKNKEKNNKKN-NNKNIKPHEDHHKNDHDHEHHEENHKQKYKEENNKKHQEKQ 291
Query: 270 HEQHHIGYSPIESRRPS*SQ----VNTCPNEMPSNIILHNKKRSQSQL*DNKQIKIVEKN 437
HE+H + E+ + + +N P +N+ + N ++ + DN K+ EK+
Sbjct: 292 HEEHQNNNNHKENIKKEENHEIPILNNNPLNQMTNMAIPNVSQNILPIMDNSIPKMEEKH 351
Query: 438 NQAPSITKDLKYHSNLQKI 494
I +++Y+ N + I
Sbjct: 352 T---PINNEIQYNKNNEDI 367
>gb|EAA18442.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1778
Score = 36.2 bits (82), Expect = 0.26
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +3
Query: 123 KLNTRKNFSQKQIKTETQNHKRGLKTVNSIEQQRTSFKSK*SASPDYGKHEQHHIGYSPI 302
K+N+ KN ++K+ + + K+ + NS ++ S+ AS + ++
Sbjct: 239 KINSEKNNTEKKNSEKKNSEKKNSEKKNSEKKASEKKASEKKASEKKASENEKNV----- 293
Query: 303 ESRRPS*SQVNTCPNEMP---SNIILHNKKRSQSQL*DNKQIKIVEKNNQAPSITKDLKY 473
+ +R + N N + II NK S + + ++QI+IV+KNN SI +
Sbjct: 294 DGQREDKQRKNLGSNSFQIVNNQIIEQNKMESTNNI--DEQIEIVKKNNPLLSIKPNKSQ 351
Query: 474 HSNL 485
+SNL
Sbjct: 352 NSNL 355
>gb|EAA19866.1| asparagine-rich protein [Plasmodium yoelii yoelii]
Length = 459
Score = 35.0 bits (79), Expect = 0.58
Identities = 34/118 (28%), Positives = 52/118 (43%), Gaps = 10/118 (8%)
Frame = +3
Query: 99 SRSKKKIRKLNTRKN-------FSQKQIKTETQNHKRGLKTVNSIEQQRTSFKSK*SASP 257
S+ KKIR N N + IK+ N+K+GLKT N EQQ + + +
Sbjct: 76 SKISKKIRIANEENNDDIAILKIERDLIKSNIVNNKKGLKTCNKDEQQLEDDECIENETE 135
Query: 258 DYGKHEQHHIGYSPIESRRPS*SQVNT-CPNEM--PSNIILHNKKRSQSQL*DNKQIK 422
K+E+ S S VN+ P ++ +N+ ++NK L DN +IK
Sbjct: 136 KTAKYEKRKKKKKKTSHSHSSQSYVNSVTPLQIFHDNNLCMNNKCYHNDFLFDNLKIK 193
Score = 31.2 bits (69), Expect = 8.4
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Frame = +3
Query: 18 FFQKENNFIY*KASKRITLSR*GVR----NQSRSKKKIRKLNTRKNFSQKQIKTETQNHK 185
F Q N+ IY K K++ R +R N ++KKK RKL K+ +++ + H
Sbjct: 220 FDQSNNSIIYKKEKKKLKKKRKLLRSVFFNNDKNKKKKRKLINEKDKLNNEME---EIHV 276
Query: 186 RGLKTVNSIEQQRTSFKSK*SASPDYG------------KHEQHHIGYSP--IESRRPS* 323
G N T + S+ +ASP G K +I + I+S +
Sbjct: 277 DGKVGENINPNNVTEYISEHNASPPLGVDGCIPNSSEVEKEVFKNINSNKINIKSNNHNF 336
Query: 324 SQVNTCPNEMPSNIILHNKKRSQSQL*DNKQI-KIVEKNNQAPSITKDLKYHSNLQKI 494
S N SN ++ N K + K+I K V + N + L + S++ KI
Sbjct: 337 SSFNDSNFYNSSNFVVDNNKNKAYWISMKKEINKNVCETNTKTITSNILTFFSSISKI 394
>gb|AAH46668.1| Similar to splicing factor, arginine/serine-rich 6 [Xenopus laevis]
Length = 667
Score = 34.7 bits (78), Expect = 0.76
Identities = 26/103 (25%), Positives = 51/103 (49%)
Frame = +3
Query: 90 RNQSRSKKKIRKLNTRKNFSQKQIKTETQNHKRGLKTVNSIEQQRTSFKSK*SASPDYGK 269
R++SRSK K + +R N ++ ++ +++ ++ + E+ R+ KSK S GK
Sbjct: 427 RSRSRSKAKDDRSRSRSNAKDERSRSRSKDEMSLSRSRENRERSRSPSKSKHDRSRSQGK 486
Query: 270 HEQHHIGYSPIESRRPS*SQVNTCPNEMPSNIILHNKKRSQSQ 398
HE + S +S+R +T E ++ ++RS S+
Sbjct: 487 HE---MSGSRSKSKRDRSGSRSTSKQERSNSRSKSKRERSSSR 526
>gb|AAH32191.1| Unknown (protein for MGC:36411) [Mus musculus]
Length = 913
Score = 34.3 bits (77), Expect = 0.99
Identities = 20/75 (26%), Positives = 36/75 (47%)
Frame = +3
Query: 90 RNQSRSKKKIRKLNTRKNFSQKQIKTETQNHKRGLKTVNSIEQQRTSFKSK*SASPDYGK 269
R++SRSK + R + + S K ++ +++H R +S + R+ +S+ S S +
Sbjct: 724 RSRSRSKSRGRSSSRSSSRSSKSSRSSSRSHSRSRSRSSSRSRSRSRSRSRSSRSRSRSR 783
Query: 270 HEQHHIGYSPIESRR 314
YSP RR
Sbjct: 784 SRSRSKSYSPGRRRR 798
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,703,586
Number of Sequences: 1393205
Number of extensions: 9393869
Number of successful extensions: 29069
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 27613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28949
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
