Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017969A_C01 KMC017969A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66127.1| unknown [Arabidopsis thaliana] 267 7e-71
ref|NP_030522.1| expressed protein; protein id: At2g39760.1, sup... 266 2e-70
gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|273119... 231 4e-60
ref|NP_566275.1| expressed protein; protein id: At3g06190.1, sup... 223 1e-57
dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~... 223 2e-57
>gb|AAM66127.1| unknown [Arabidopsis thaliana]
Length = 408
Score = 267 bits (683), Expect = 7e-71
Identities = 127/203 (62%), Positives = 165/203 (80%), Gaps = 1/203 (0%)
Frame = -1
Query: 606 SMWGYKRFFRRSLLESSEYLKNDCLVMHCTVGVVKTRFEGSRP-GVVVPTSAMGLDFKEL 430
SMWGYKRFF+RS LE+S+YLK+DCLV++CTVGVV+ R EG + G+V+P S MG K+L
Sbjct: 128 SMWGYKRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDL 187
Query: 429 FESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDIEPFIFKA 250
+SEVGCDI F+V E++KAHK++LAARSPVFRAQFFGP+G+ + V++DIEP IFKA
Sbjct: 188 LDSEVGCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKA 247
Query: 249 MLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDN 70
ML FIY+D LP+++E+ GS S+ M+QHL+AAADLY++ RLK+LCE LC+++ +DN
Sbjct: 248 MLSFIYTDVLPNVHEITGSTSASSFTNMIQHLLAAADLYDLARLKILCEVLLCEKLDVDN 307
Query: 69 VATSLALAEQHHCPQLKAICLKF 1
VAT+LALAEQH QLKA CLKF
Sbjct: 308 VATTLALAEQHQFLQLKAFCLKF 330
>ref|NP_030522.1| expressed protein; protein id: At2g39760.1, supported by cDNA:
8256. [Arabidopsis thaliana] gi|7487697|pir||T01006
hypothetical protein At2g39760 [imported] - Arabidopsis
thaliana gi|2642158|gb|AAB87125.1| expressed protein
[Arabidopsis thaliana] gi|22135872|gb|AAM91518.1|
unknown protein [Arabidopsis thaliana]
gi|23197672|gb|AAN15363.1| unknown protein [Arabidopsis
thaliana]
Length = 408
Score = 266 bits (679), Expect = 2e-70
Identities = 126/203 (62%), Positives = 165/203 (81%), Gaps = 1/203 (0%)
Frame = -1
Query: 606 SMWGYKRFFRRSLLESSEYLKNDCLVMHCTVGVVKTRFEGSRP-GVVVPTSAMGLDFKEL 430
SMWGYKRFF+RS LE+S+YLK+DCLV++CTVGVV+ R EG + G+V+P S MG K+L
Sbjct: 128 SMWGYKRFFKRSALETSDYLKDDCLVINCTVGVVRARLEGPKQYGIVLPLSNMGQGLKDL 187
Query: 429 FESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDIEPFIFKA 250
+SEVGCDI F+V E++KAHK++LAARSPVFRAQFFGP+G+ + V++DIEP IFKA
Sbjct: 188 LDSEVGCDIAFQVGDETYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEPSIFKA 247
Query: 249 MLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDN 70
ML FIY+D LP+++E+ GS S+ M+QHL+AAADLY++ RLK+LCE LC+++ +DN
Sbjct: 248 MLSFIYTDVLPNVHEITGSTSASSFTNMIQHLLAAADLYDLARLKILCEVLLCEKLDVDN 307
Query: 69 VATSLALAEQHHCPQLKAICLKF 1
VAT+LALAEQH QLKA CL+F
Sbjct: 308 VATTLALAEQHQFLQLKAFCLEF 330
>gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|27311975|gb|AAO00953.1|
putative protein [Arabidopsis thaliana]
Length = 407
Score = 231 bits (590), Expect = 4e-60
Identities = 116/203 (57%), Positives = 149/203 (73%), Gaps = 1/203 (0%)
Frame = -1
Query: 606 SMWGYKRFFRRSLLESSEYLKNDCLVMHCTVGVVKTRFEGSRP-GVVVPTSAMGLDFKEL 430
SMWGYKRFFRRS LESS+YLK + L++ C VGVVK+ EG R + VP S +G L
Sbjct: 137 SMWGYKRFFRRSSLESSDYLKENSLLVRCRVGVVKSVTEGPRYYNIPVPVSNLGQQLGNL 196
Query: 429 FESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDIEPFIFKA 250
ES GCD+VF+V E+F AHK+VLA RSPVF AQ FGP+GD + +ED+E IFK
Sbjct: 197 LESGKGCDVVFQVDGETFNAHKLVLATRSPVFNAQLFGPLGDRNTKCITIEDMEAPIFKV 256
Query: 249 MLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDN 70
+L FIY D+LPD+ E++G+ + ++ QHL+AAAD Y ++RLK +CESKLC+ + I+
Sbjct: 257 LLHFIYWDELPDMQELIGTDSTLASTLVAQHLLAAADRYALERLKAICESKLCEGVAINT 316
Query: 69 VATSLALAEQHHCPQLKAICLKF 1
VAT+LALAEQHHC QLKA+CLKF
Sbjct: 317 VATTLALAEQHHCLQLKAVCLKF 339
>ref|NP_566275.1| expressed protein; protein id: At3g06190.1, supported by cDNA:
gi_15028068, supported by cDNA: gi_20259304 [Arabidopsis
thaliana] gi|6862923|gb|AAF30312.1|AC018907_12 unknown
protein [Arabidopsis thaliana]
gi|15028069|gb|AAK76565.1| unknown protein [Arabidopsis
thaliana] gi|20259305|gb|AAM14388.1| unknown protein
[Arabidopsis thaliana]
Length = 406
Score = 223 bits (569), Expect = 1e-57
Identities = 112/203 (55%), Positives = 151/203 (74%), Gaps = 1/203 (0%)
Frame = -1
Query: 606 SMWGYKRFFRRSLLESSEYLKNDCLVMHCTVGVVKTRFEGSRP-GVVVPTSAMGLDFKEL 430
SMWGYKRFF+RSLLESS+YLK++ L++ C VGVVK+R EG R + VP S +G F +L
Sbjct: 136 SMWGYKRFFKRSLLESSDYLKDNGLLVRCCVGVVKSRTEGPRCYNIPVPVSGLGQQFGKL 195
Query: 429 FESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDIEPFIFKA 250
ES G D+ F+V E+F AHK+VLAARS VFRAQ FGP+ ++ED++ IFK
Sbjct: 196 LESGKGADVTFEVDGETFPAHKLVLAARSAVFRAQLFGPLRSENTNCIIIEDVQAPIFKM 255
Query: 249 MLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDN 70
+L FIY D++PD+ +++G+ + ++ QHL+AAAD Y ++RL+ +CESKLC+ I+I+
Sbjct: 256 LLHFIYWDEMPDMQDLIGTDLKWASTLVAQHLLAAADRYALERLRTICESKLCEGISINT 315
Query: 69 VATSLALAEQHHCPQLKAICLKF 1
VAT+LALAEQHHC QLKA CLKF
Sbjct: 316 VATTLALAEQHHCFQLKAACLKF 338
>dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~similar to
Arabidopsis thaliana chromosome 5, At5g19000~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 434
Score = 223 bits (567), Expect = 2e-57
Identities = 112/203 (55%), Positives = 145/203 (71%), Gaps = 1/203 (0%)
Frame = -1
Query: 606 SMWGYKRFFRRSLLESSEYLKNDCLVMHCTVGVVKTRFEGSRPGVV-VPTSAMGLDFKEL 430
SMWGYKRFF+RS LE+S+YLK+DCL+++CTVGVV++ EG + + VP S M +L
Sbjct: 166 SMWGYKRFFKRSALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPPSNMSQHIGQL 225
Query: 429 FESEVGCDIVFKVKSESFKAHKVVLAARSPVFRAQFFGPVGDPKQEEAVVEDIEPFIFKA 250
DI F+V E F AHKVVLAARSPVFRAQ FGP+ D + +ED+E +FKA
Sbjct: 226 LTDGKRTDITFEVDGEVFPAHKVVLAARSPVFRAQLFGPMKDKNMKRITIEDMEASVFKA 285
Query: 249 MLLFIYSDKLPDIYEVMGSVPMCSYAVMMQHLVAAADLYNIDRLKLLCESKLCDEITIDN 70
+L F+Y D+LPDI E+ G +M QHL+AAAD Y ++RLKLLCE KLC+++ I+
Sbjct: 286 LLHFMYWDELPDIEELTGLNTTWVSTLMAQHLLAAADRYALERLKLLCELKLCEDVAINT 345
Query: 69 VATSLALAEQHHCPQLKAICLKF 1
VA +LALAEQHHC QLK +CL+F
Sbjct: 346 VANTLALAEQHHCYQLKTVCLRF 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,455,759
Number of Sequences: 1393205
Number of extensions: 10840951
Number of successful extensions: 32498
Number of sequences better than 10.0: 887
Number of HSP's better than 10.0 without gapping: 30753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32166
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
