Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017968A_C01 KMC017968A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T15480 hypothetical protein C10A4.5 - Caenorhabditis elegans 35 0.67
ref|NP_509250.1| Putative membrane protein, with at least 3 tran... 35 0.67
sp|Q65941|E1A_ADECC EARLY E1A 25 KD PROTEIN gi|1477655|gb|AAB054... 34 0.87
sp|P35982|E1A_ADECG EARLY E1A 20 KD PROTEIN gi|419377|pir||A6001... 34 0.87
ref|NP_044183.1| putative [Canine adenovirus type 1] gi|3913549|... 34 0.87
>pir||T15480 hypothetical protein C10A4.5 - Caenorhabditis elegans
Length = 373
Score = 34.7 bits (78), Expect = 0.67
Identities = 23/70 (32%), Positives = 36/70 (50%)
Frame = -3
Query: 340 SSFPVTVQLILSFLVYPS*AISILAKHATILCEMCCQFETMTTSNYNWVIFYLNFCSLII 161
S +T+ L LS +V+ + A IL T L + C T T +NYN ++ +LNF +
Sbjct: 56 SELKLTILLYLSIIVWLTIASMILVT-LTFLKKFC----TSTAANYNMIVMFLNFVFNVA 110
Query: 160 *EM*FVKHAS 131
F+KH +
Sbjct: 111 IMRNFLKHGT 120
>ref|NP_509250.1| Putative membrane protein, with at least 3 transmembrane domains,
nematode specific [Caenorhabditis elegans]
gi|15487562|gb|AAC46519.2| Hypothetical protein C10A4.5
[Caenorhabditis elegans]
Length = 368
Score = 34.7 bits (78), Expect = 0.67
Identities = 23/70 (32%), Positives = 36/70 (50%)
Frame = -3
Query: 340 SSFPVTVQLILSFLVYPS*AISILAKHATILCEMCCQFETMTTSNYNWVIFYLNFCSLII 161
S +T+ L LS +V+ + A IL T L + C T T +NYN ++ +LNF +
Sbjct: 56 SELKLTILLYLSIIVWLTIASMILVT-LTFLKKFC----TSTAANYNMIVMFLNFVFNVA 110
Query: 160 *EM*FVKHAS 131
F+KH +
Sbjct: 111 IMRNFLKHGT 120
>sp|Q65941|E1A_ADECC EARLY E1A 25 KD PROTEIN gi|1477655|gb|AAB05429.1| E1A protein
Length = 230
Score = 34.3 bits (77), Expect = 0.87
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 381 EDPMSETTDIGFDLR---LSPLPSNSSSPSLSIPPELFQFWPSMPQY 250
E +S TD+GF L +SPLPS S+SP+ SIP ++ MP +
Sbjct: 70 ESTISTETDVGFTLNTPPVSPLPSYSTSPA-SIPEDMLLCLEEMPTF 115
>sp|P35982|E1A_ADECG EARLY E1A 20 KD PROTEIN gi|419377|pir||A60010 early E1A 20K protein
- canine adenovirus 1
Length = 175
Score = 34.3 bits (77), Expect = 0.87
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 381 EDPMSETTDIGFDLR---LSPLPSNSSSPSLSIPPELFQFWPSMPQY 250
E +S TD+GF L +SPLPS S+SP+ SIP ++ MP +
Sbjct: 70 ESTISTETDVGFTLNTPPVSPLPSYSTSPA-SIPEDMLLCLEEMPTF 115
>ref|NP_044183.1| putative [Canine adenovirus type 1] gi|3913549|sp|Q96676|E1A_ADECR
EARLY E1A 20 KD PROTEIN gi|1526576|emb|CAA69051.1|
putative [Canine adenovirus type 1]
Length = 174
Score = 34.3 bits (77), Expect = 0.87
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 381 EDPMSETTDIGFDLR---LSPLPSNSSSPSLSIPPELFQFWPSMPQY 250
E +S TD+GF L +SPLPS S+SP+ SIP ++ MP +
Sbjct: 70 ESTISTETDVGFTLNTPPVSPLPSYSTSPA-SIPEDMLLCLEEMPTF 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,857,467
Number of Sequences: 1393205
Number of extensions: 9442830
Number of successful extensions: 26976
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26867
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
