Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017967A_C01 KMC017967A_c01
(413 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182139.1| hypothetical protein; protein id: At2g46160.1, ... 136 7e-32
ref|NP_191714.1| putative protein; protein id: At3g61550.1, supp... 127 4e-29
dbj|BAB89451.1| OSJNBb0021A09.3 [Oryza sativa (japonica cultivar... 117 3e-26
ref|NP_181135.2| putative RING zinc finger protein; protein id: ... 80 8e-15
pir||E84774 probable RING zinc finger protein [imported] - Arabi... 80 8e-15
>ref|NP_182139.1| hypothetical protein; protein id: At2g46160.1, supported by cDNA:
gi_18491264 [Arabidopsis thaliana]
gi|25408967|pir||D84899 hypothetical protein At2g46160
[imported] - Arabidopsis thaliana
gi|3702333|gb|AAC62890.1| hypothetical protein
[Arabidopsis thaliana] gi|18491265|gb|AAL69457.1|
At2g46160/T3F17.19 [Arabidopsis thaliana]
Length = 214
Score = 136 bits (342), Expect = 7e-32
Identities = 60/72 (83%), Positives = 65/72 (89%)
Frame = -2
Query: 412 LCEYQDSEMLRMMPECRPYFHLCCLDSWLKLKGSCPVCRNSPLPTPVFTPLSTPLQEVVP 233
LCEY+++EMLRMMPEC+ YFHLCCLD+WLKL GSCPVCRNSPLPTP TPLSTPL EVVP
Sbjct: 142 LCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVP 201
Query: 232 LSPYAADRRRRR 197
LS YAADRRR R
Sbjct: 202 LSQYAADRRRAR 213
>ref|NP_191714.1| putative protein; protein id: At3g61550.1, supported by cDNA:
gi_16226238 [Arabidopsis thaliana]
gi|11357712|pir||T47947 hypothetical protein F2A19.150 -
Arabidopsis thaliana gi|6850846|emb|CAB71085.1| putative
protein [Arabidopsis thaliana]
gi|16226239|gb|AAL16112.1|AF428280_1 AT3g61550/F2A19_150
[Arabidopsis thaliana] gi|21436049|gb|AAM51602.1|
AT3g61550/F2A19_150 [Arabidopsis thaliana]
Length = 212
Score = 127 bits (318), Expect = 4e-29
Identities = 57/72 (79%), Positives = 61/72 (84%)
Frame = -2
Query: 412 LCEYQDSEMLRMMPECRPYFHLCCLDSWLKLKGSCPVCRNSPLPTPVFTPLSTPLQEVVP 233
LCEY + EMLRMMPEC+ YFH+ CLD+WLKL GSCPVCRNSPLPTP TP STPL EVVP
Sbjct: 140 LCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVP 199
Query: 232 LSPYAADRRRRR 197
LS YAADRRR R
Sbjct: 200 LSQYAADRRRSR 211
>dbj|BAB89451.1| OSJNBb0021A09.3 [Oryza sativa (japonica cultivar-group)]
Length = 238
Score = 117 bits (293), Expect = 3e-26
Identities = 51/72 (70%), Positives = 60/72 (82%)
Frame = -2
Query: 412 LCEYQDSEMLRMMPECRPYFHLCCLDSWLKLKGSCPVCRNSPLPTPVFTPLSTPLQEVVP 233
L EY D EMLR+MP+CR FH+CCLD+WL+ SCPVCR+SP+PTPV TPL+TPL E+VP
Sbjct: 167 LSEYADGEMLRVMPDCRHRFHVCCLDAWLRRNASCPVCRSSPIPTPVATPLATPLSELVP 226
Query: 232 LSPYAADRRRRR 197
LS YAADRRR R
Sbjct: 227 LSQYAADRRRSR 238
>ref|NP_181135.2| putative RING zinc finger protein; protein id: At2g35910.1,
supported by cDNA: gi_20258807 [Arabidopsis thaliana]
gi|20258808|gb|AAM13985.1| putative RING zinc finger
protein [Arabidopsis thaliana]
gi|21689891|gb|AAM67506.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 217
Score = 79.7 bits (195), Expect = 8e-15
Identities = 37/69 (53%), Positives = 47/69 (67%)
Frame = -2
Query: 412 LCEYQDSEMLRMMPECRPYFHLCCLDSWLKLKGSCPVCRNSPLPTPVFTPLSTPLQEVVP 233
L +Y+ +LR +P+C FHL C+D+WL+L +CPVCR SPLP TPLSTPL EVVP
Sbjct: 151 LGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLP----TPLSTPLAEVVP 206
Query: 232 LSPYAADRR 206
L+ A R
Sbjct: 207 LASSVAATR 215
>pir||E84774 probable RING zinc finger protein [imported] - Arabidopsis thaliana
gi|4510378|gb|AAD21466.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 180
Score = 79.7 bits (195), Expect = 8e-15
Identities = 37/69 (53%), Positives = 47/69 (67%)
Frame = -2
Query: 412 LCEYQDSEMLRMMPECRPYFHLCCLDSWLKLKGSCPVCRNSPLPTPVFTPLSTPLQEVVP 233
L +Y+ +LR +P+C FHL C+D+WL+L +CPVCR SPLP TPLSTPL EVVP
Sbjct: 114 LGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLP----TPLSTPLAEVVP 169
Query: 232 LSPYAADRR 206
L+ A R
Sbjct: 170 LASSVAATR 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,393,235
Number of Sequences: 1393205
Number of extensions: 8502606
Number of successful extensions: 36183
Number of sequences better than 10.0: 820
Number of HSP's better than 10.0 without gapping: 30820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35367
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
