Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017962A_C01 KMC017962A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL26911.1|AF319167_1 unknown [Prunus persica] 76 3e-13
dbj|BAB89702.1| P0504E02.2 [Oryza sativa (japonica cultivar-group)] 41 4e-07
gb|AAL67126.1| unknown protein [Arabidopsis thaliana] 47 2e-04
gb|EAA21933.1| hypothetical protein [Plasmodium yoelii yoelii] 40 0.032
gb|AAB00143.1| putative 39 0.055
>gb|AAL26911.1|AF319167_1 unknown [Prunus persica]
Length = 133
Score = 76.3 bits (186), Expect = 3e-13
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = -2
Query: 575 VGDMKSENGDVQLNLAEDSEELKSKLNIMDSKLREAEATIMMLNEERRMNTKEKDFFKRE 396
V ++K V LNL +D +ELK KLN +DSKL+EAE TIM L E+R M T+EK+ K E
Sbjct: 36 VEELKPAKDAVALNLTKDFDELKLKLNTLDSKLKEAELTIMKLTEDRSMTTREKNMLKHE 95
Query: 395 LEVLKKKINHKR 360
LE+L++K N KR
Sbjct: 96 LELLRRKNNVKR 107
Score = 55.5 bits (132), Expect = 6e-07
Identities = 22/47 (46%), Positives = 33/47 (69%)
Frame = -3
Query: 421 KKKIFLRESWRC*RKKSTTKGVQTGFPLLFVCMVALVSVAVGYYVHP 281
++K L+ R+K+ K + GFPL +VCMVAL+S+A+GYY+HP
Sbjct: 87 REKNMLKHELELLRRKNNVKRIMVGFPLFYVCMVALISLAIGYYIHP 133
>dbj|BAB89702.1| P0504E02.2 [Oryza sativa (japonica cultivar-group)]
Length = 394
Score = 41.2 bits (95), Expect(2) = 4e-07
Identities = 29/82 (35%), Positives = 42/82 (50%), Gaps = 20/82 (24%)
Frame = -2
Query: 560 SENGDVQL------NLAEDSEELKSKLNIMDSKLRE--------------AEATIMMLNE 441
SE G V + ++ ED + LKSKLN ++ KL E AE I+ L E
Sbjct: 283 SEQGAVNVQSRQLCHVTEDVQNLKSKLNGLEVKLEEIILSEVKHKLSDLQAEKMIIKLRE 342
Query: 440 ERRMNTKEKDFFKRELEVLKKK 375
E R T+E+D ++E+ L+KK
Sbjct: 343 ESRTTTQERDKLQQEMMFLRKK 364
Score = 34.3 bits (77), Expect(2) = 4e-07
Identities = 17/30 (56%), Positives = 21/30 (69%)
Frame = -3
Query: 382 RKKSTTKGVQTGFPLLFVCMVALVSVAVGY 293
RKK T + Q GFPLLFV VAL+ ++GY
Sbjct: 362 RKKGTPRN-QVGFPLLFVVYVALLGTSLGY 390
>gb|AAL67126.1| unknown protein [Arabidopsis thaliana]
Length = 151
Score = 47.4 bits (111), Expect = 2e-04
Identities = 27/82 (32%), Positives = 52/82 (62%), Gaps = 1/82 (1%)
Frame = -2
Query: 569 DMKSENGDVQLNLAEDSEELKSKLNIMDSKLREAEATIMMLNEERRMNTKEKDFFKREL- 393
D ++ G +L L +D EE+K K++ ++SKL++A++TI L EER ++++ + + EL
Sbjct: 56 DGQNVRGLDELKLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELA 115
Query: 392 EVLKKKINHKRSSDWLSITVCL 327
E+ KKI + + + + VC+
Sbjct: 116 ELRTKKIVKEVHNGFPLLYVCV 137
Score = 37.4 bits (85), Expect = 0.16
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 382 RKKSTTKGVQTGFPLLFVCMVALVSVAVGYYV 287
R K K V GFPLL+VC+VA ++ +G+++
Sbjct: 118 RTKKIVKEVHNGFPLLYVCVVAFIAYVIGHFL 149
>gb|EAA21933.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1091
Score = 39.7 bits (91), Expect = 0.032
Identities = 17/63 (26%), Positives = 37/63 (57%)
Frame = -2
Query: 563 KSENGDVQLNLAEDSEELKSKLNIMDSKLREAEATIMMLNEERRMNTKEKDFFKRELEVL 384
K +N D+ L + ++ +E++ + ++ +SK++ + + LN+ + KEKD EL +L
Sbjct: 767 KEKNEDLFLKIQDEKKEIEKRESVNESKIKNLNSELEKLNKSILLEQKEKDGLLNELNIL 826
Query: 383 KKK 375
K +
Sbjct: 827 KNE 829
>gb|AAB00143.1| putative
Length = 1015
Score = 38.9 bits (89), Expect = 0.055
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Frame = -2
Query: 617 DRTYEDTVTRYTENVGDMKSENGDV--QLNLAE-DSEELKSKLNIMDSKLREAEATIMML 447
D E + E++ +++ E D+ ++N +E D EELKSKL I E E L
Sbjct: 751 DEKLEQSKKSAEEDIKNLQHEKSDLISRINESEKDIEELKSKLRIEAKSSSELETVKQEL 810
Query: 446 N---EERRMNTKEKDFFKRELEVLKKKINHKRS 357
N E+ R+N +E K +LE +++++ K++
Sbjct: 811 NNAQEKIRVNAEENTVLKSKLEDIERELKDKQA 843
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,396,687
Number of Sequences: 1393205
Number of extensions: 10802087
Number of successful extensions: 31704
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 29642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31616
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
