Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017961A_C01 KMC017961A_c01
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65389.1| senescence-associated protein (SAG29) [Arabidopsi... 110 1e-23
ref|NP_196821.1| senescence-associated protein (SAG29); protein ... 109 3e-23
emb|CAA69976.1| MtN3 [Medicago truncatula] 97 1e-19
ref|NP_199892.1| MtN3-like protein; protein id: At5g50790.1, sup... 85 8e-16
emb|CAC44123.1| N3 like protein [Medicago truncatula] 82 4e-15
>gb|AAM65389.1| senescence-associated protein (SAG29) [Arabidopsis thaliana]
Length = 292
Score = 110 bits (275), Expect = 1e-23
Identities = 59/110 (53%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 604 SVEFMPFYLSFFLTLSAIMWFVYGVLLKDICIAIPNVLGFALGLLQMLLYAIY-NDGAKE 428
SVE+MPF LSFFLT+SA+MWF YG+ L DICIAIPNV+GF LGLLQM+LY +Y N K
Sbjct: 163 SVEYMPFTLSFFLTISAVMWFAYGLFLNDICIAIPNVVGFVLGLLQMVLYLVYRNSNEKP 222
Query: 427 KVVITEEHALEQMQNVVVMSPLGTCEVCLIPVTNDVSDKGKEVAEEKEKS 278
+ + + E EQ++++VVMSPLG EV PV + D E ++ S
Sbjct: 223 EKINSSE---EQLKSIVVMSPLGVSEV--HPVVTESVDPLSEAVHHEDLS 267
>ref|NP_196821.1| senescence-associated protein (SAG29); protein id: At5g13170.1,
supported by cDNA: 38843., supported by cDNA:
gi_15028292, supported by cDNA: gi_21281009 [Arabidopsis
thaliana] gi|9955561|emb|CAC05445.1|
senescence-associated protein (SAG29) [Arabidopsis
thaliana] gi|15028293|gb|AAK76623.1| putative
senescence-associated protein SAG29 [Arabidopsis
thaliana] gi|21281010|gb|AAM44982.1| putative
senescence-associated protein SAG29 [Arabidopsis
thaliana]
Length = 292
Score = 109 bits (272), Expect = 3e-23
Identities = 58/110 (52%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 604 SVEFMPFYLSFFLTLSAIMWFVYGVLLKDICIAIPNVLGFALGLLQMLLYAIY-NDGAKE 428
SVE+MPF LSFFLT+SA+MWF YG+ L DICIAIPNV+GF LGLLQM+LY +Y N K
Sbjct: 163 SVEYMPFTLSFFLTISAVMWFAYGLFLNDICIAIPNVVGFVLGLLQMVLYLVYRNSNEKP 222
Query: 427 KVVITEEHALEQMQNVVVMSPLGTCEVCLIPVTNDVSDKGKEVAEEKEKS 278
+ + + E +Q++++VVMSPLG EV PV + D E ++ S
Sbjct: 223 EKINSSE---QQLKSIVVMSPLGVSEV--HPVVTESVDPLSEAVHHEDLS 267
>emb|CAA69976.1| MtN3 [Medicago truncatula]
Length = 268
Score = 97.4 bits (241), Expect = 1e-19
Identities = 55/111 (49%), Positives = 72/111 (64%)
Frame = -2
Query: 604 SVEFMPFYLSFFLTLSAIMWFVYGVLLKDICIAIPNVLGFALGLLQMLLYAIYNDGAKEK 425
SVEFMPF LSF LTLSA MWF YG LKDICI +PNVLG LGLLQMLLYAIY +G ++
Sbjct: 160 SVEFMPFNLSFTLTLSATMWFGYGFFLKDICIXLPNVLGXVLGLLQMLLYAIYRNGGEKA 219
Query: 424 VVITEEHALEQMQNVVVMSPLGTCEVCLIPVTNDVSDKGKEVAEEKEKSGE 272
+ ++ +E +++V+ E L + + +K + EEK+KS E
Sbjct: 220 MKKEKKAPIEPPKSIVI-------ETQLEKIEQEKKNKDDD-NEEKDKSEE 262
>ref|NP_199892.1| MtN3-like protein; protein id: At5g50790.1, supported by cDNA:
114681., supported by cDNA: gi_15450935, supported by
cDNA: gi_17978772 [Arabidopsis thaliana]
gi|8777402|dbj|BAA96992.1| MtN3-like protein
[Arabidopsis thaliana] gi|15450936|gb|AAK96739.1|
MtN3-like protein [Arabidopsis thaliana]
gi|17978773|gb|AAL47380.1| MtN3-like protein
[Arabidopsis thaliana] gi|21536902|gb|AAM61234.1|
MtN3-like protein [Arabidopsis thaliana]
Length = 289
Score = 84.7 bits (208), Expect = 8e-16
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = -2
Query: 604 SVEFMPFYLSFFLTLSAIMWFVYGVLLKDICIAIPNVLGFALGLLQMLLYAIY 446
S EFMPF LSFFLTLSA+MWF YG+LLKD+ IA+PNVLGF G+LQM+L+ IY
Sbjct: 160 SAEFMPFGLSFFLTLSAVMWFFYGLLLKDMNIALPNVLGFIFGVLQMILFLIY 212
>emb|CAC44123.1| N3 like protein [Medicago truncatula]
Length = 255
Score = 82.4 bits (202), Expect = 4e-15
Identities = 33/55 (60%), Positives = 47/55 (85%)
Frame = -2
Query: 604 SVEFMPFYLSFFLTLSAIMWFVYGVLLKDICIAIPNVLGFALGLLQMLLYAIYND 440
SVE+MPF+LSFFLT++A+MWF YG+LL+D +A+PN LGF G++QM++Y IY +
Sbjct: 161 SVEYMPFFLSFFLTINAVMWFFYGLLLRDYYVALPNTLGFVFGIIQMVVYLIYRN 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,347,633
Number of Sequences: 1393205
Number of extensions: 11385641
Number of successful extensions: 27847
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 26915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27827
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
