Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017959A_C01 KMC017959A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200902.1| cleavage stimulation factor-related; protein id... 59 5e-08
dbj|BAB10643.1| cleavage stimulation factor subunit 1-like prote... 59 5e-08
gb|AAL74184.1|AF459639_2 putative cleavage stimulation factor su... 55 4e-07
gb|AAG49000.1| putative cleavage stimulation factor subunit 1 [H... 55 5e-07
gb|AAG45490.1| 36I5.2 [Oryza sativa (japonica cultivar-group)] 54 1e-06
>ref|NP_200902.1| cleavage stimulation factor-related; protein id: At5g60940.1,
supported by cDNA: 117291. [Arabidopsis thaliana]
gi|21536993|gb|AAM61334.1| cleavage stimulation factor
50K chain [Arabidopsis thaliana]
gi|21591635|gb|AAM64165.1|AF515696_1 cleavage
stimulation factor 50 [Arabidopsis thaliana]
gi|22531092|gb|AAM97050.1| cleavage stimulation factor
50K chain [Arabidopsis thaliana]
gi|23197952|gb|AAN15503.1| cleavage stimulation factor
50K chain [Arabidopsis thaliana]
Length = 429
Score = 58.5 bits (140), Expect = 5e-08
Identities = 22/31 (70%), Positives = 28/31 (89%)
Frame = -2
Query: 537 GAPCWLEHSPVESAFISCGTDRSVRFWKENL 445
GAP W+EHSPVES F++CG DRS+RFWKE++
Sbjct: 399 GAPRWIEHSPVESVFVTCGIDRSIRFWKESV 429
>dbj|BAB10643.1| cleavage stimulation factor subunit 1-like protein [Arabidopsis
thaliana]
Length = 425
Score = 58.5 bits (140), Expect = 5e-08
Identities = 22/31 (70%), Positives = 28/31 (89%)
Frame = -2
Query: 537 GAPCWLEHSPVESAFISCGTDRSVRFWKENL 445
GAP W+EHSPVES F++CG DRS+RFWKE++
Sbjct: 395 GAPRWIEHSPVESVFVTCGIDRSIRFWKESV 425
>gb|AAL74184.1|AF459639_2 putative cleavage stimulation factor subunit 1 [Triticum
monococcum]
Length = 424
Score = 55.5 bits (132), Expect = 4e-07
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2
Query: 537 GAPCWLEHSPVESAFISCGTDRSVRFWK 454
GAP WLEHSPVE F++CG DRSVRFWK
Sbjct: 397 GAPRWLEHSPVEPVFVTCGNDRSVRFWK 424
>gb|AAG49000.1| putative cleavage stimulation factor subunit 1 [Hordeum vulgare
subsp. vulgare]
Length = 423
Score = 55.1 bits (131), Expect = 5e-07
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2
Query: 537 GAPCWLEHSPVESAFISCGTDRSVRFWK 454
GAP WLEHSPV++ F++CG DRSVRFWK
Sbjct: 396 GAPRWLEHSPVDAVFVTCGNDRSVRFWK 423
>gb|AAG45490.1| 36I5.2 [Oryza sativa (japonica cultivar-group)]
Length = 434
Score = 53.9 bits (128), Expect = 1e-06
Identities = 21/31 (67%), Positives = 25/31 (79%)
Frame = -2
Query: 537 GAPCWLEHSPVESAFISCGTDRSVRFWKENL 445
GAP WL HSP E AF++CG DRSVRFWK+ +
Sbjct: 404 GAPRWLGHSPAEPAFVTCGNDRSVRFWKQTV 434
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,808,599
Number of Sequences: 1393205
Number of extensions: 7693245
Number of successful extensions: 13383
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13383
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
