Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017958A_C01 KMC017958A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_569033.1| putative protein; protein id: At5g66410.1, supp... 176 1e-43
dbj|BAB10917.1| contains similarity to ATP binding protein assoc... 171 6e-42
ref|NP_190665.1| putative protein; protein id: At3g50960.1 [Arab... 167 6e-41
ref|NP_179489.1| putative ATP binding protein; protein id: At2g1... 97 2e-19
gb|AAM65963.1| putative ATP binding protein [Arabidopsis thaliana] 95 7e-19
>ref|NP_569033.1| putative protein; protein id: At5g66410.1, supported by cDNA: 2489.
[Arabidopsis thaliana] gi|21592510|gb|AAM64460.1|
ATP-binding protein-like protein [Arabidopsis thaliana]
gi|28393214|gb|AAO42037.1| unknown protein [Arabidopsis
thaliana] gi|28973557|gb|AAO64103.1| unknown protein
[Arabidopsis thaliana]
Length = 230
Score = 176 bits (447), Expect = 1e-43
Identities = 82/118 (69%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Frame = -1
Query: 567 FYRCKIMDKHLKDLSPKHIDTKFIKLDAENAPFFVAKLQVKTLPCIILFRQGVAFDRLVG 388
FYRCKIMDKHLK L+P+H+DTKFIK+DAENAPFFV KL +KTLPC+ILF +G+A DRLVG
Sbjct: 113 FYRCKIMDKHLKTLAPRHVDTKFIKMDAENAPFFVTKLAIKTLPCVILFSKGIAMDRLVG 172
Query: 387 FQDLGGKDDFTTKKLEAMLIKKGIIDDKKNQNDEE-AEYDESARRTVRTSVAADSDSD 217
FQDLG KDDF+T KLE +L+KKG++ +K+ + DEE EY ES RR+VR+S DSDSD
Sbjct: 173 FQDLGAKDDFSTTKLENLLVKKGMLSEKRKEEDEEDYEYQESIRRSVRSSANVDSDSD 230
>dbj|BAB10917.1| contains similarity to ATP binding protein associated with cell
differentiation~gene_id:K1F13.6 [Arabidopsis thaliana]
Length = 234
Score = 171 bits (433), Expect = 6e-42
Identities = 80/122 (65%), Positives = 100/122 (81%), Gaps = 5/122 (4%)
Frame = -1
Query: 567 FYRCKIMDKHLKDLSPKHIDTKFIKLDAENAPFFVAKLQVKTLPCIILFRQGVAFDRLVG 388
FYRCKIMDKHLK L+P+H+DTKFIK+DAENAPFFV KL +KTLPC+ILF +G+A DRLVG
Sbjct: 113 FYRCKIMDKHLKTLAPRHVDTKFIKMDAENAPFFVTKLAIKTLPCVILFSKGIAMDRLVG 172
Query: 387 FQDLGGKDDFTTKKLEAMLIKKG-----IIDDKKNQNDEEAEYDESARRTVRTSVAADSD 223
FQDLG KDDF+T KLE +L+KKG + + +K +++E+ EY ES RR+VR+S DSD
Sbjct: 173 FQDLGAKDDFSTTKLENLLVKKGFFTGMLSEKRKEEDEEDYEYQESIRRSVRSSANVDSD 232
Query: 222 SD 217
SD
Sbjct: 233 SD 234
>ref|NP_190665.1| putative protein; protein id: At3g50960.1 [Arabidopsis thaliana]
gi|7485705|pir||T08417 hypothetical protein F18B3.240 -
Arabidopsis thaliana gi|4835247|emb|CAB42925.1| putative
tRNA synthetase [Arabidopsis thaliana]
Length = 225
Score = 167 bits (424), Expect = 6e-41
Identities = 84/131 (64%), Positives = 101/131 (76%), Gaps = 14/131 (10%)
Frame = -1
Query: 567 FYRCKIMDKHLKDLSPKHIDTKFIKLDAENAPFFVAKLQVKTLPCIILFRQGVAFDRLVG 388
FYRCKIMDKHLK L+P+H+DTKFIK+DAENAPFFV KL +KTLPC++LF +GVA DRLVG
Sbjct: 95 FYRCKIMDKHLKTLAPRHVDTKFIKVDAENAPFFVTKLAIKTLPCVVLFSKGVAMDRLVG 154
Query: 387 FQDLGGKDDFTTKKLEAMLIKK-------------GIID-DKKNQNDEEAEYDESARRTV 250
FQDLG KDDFTT KLE +L+KK G++ KK ++DE+AEY ES RR+V
Sbjct: 155 FQDLGTKDDFTTNKLENVLLKKVREFLLKECKSLTGMLSKKKKEEDDEDAEYQESIRRSV 214
Query: 249 RTSVAADSDSD 217
R+S DSDSD
Sbjct: 215 RSSENLDSDSD 225
>ref|NP_179489.1| putative ATP binding protein; protein id: At2g18990.1 [Arabidopsis
thaliana] gi|5902677|sp|O64628|14P_ARATH Protein
At2g18990 gi|7484813|pir||T01627 probable ATP binding
protein At2g18990 [imported] - Arabidopsis thaliana
gi|20197041|gb|AAM14890.1| putative ATP binding protein
[Arabidopsis thaliana] gi|26453307|dbj|BAC43726.1|
putative ATP binding protein [Arabidopsis thaliana]
gi|28950741|gb|AAO63294.1| At2g18990 [Arabidopsis
thaliana]
Length = 211
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/121 (38%), Positives = 73/121 (59%), Gaps = 4/121 (3%)
Frame = -1
Query: 567 FYR----CKIMDKHLKDLSPKHIDTKFIKLDAENAPFFVAKLQVKTLPCIILFRQGVAFD 400
FYR CK+MDKH+ L+ +HI+T+F+K+ AE +PF +L++ LP + L + D
Sbjct: 91 FYRENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDD 150
Query: 399 RLVGFQDLGGKDDFTTKKLEAMLIKKGIIDDKKNQNDEEAEYDESARRTVRTSVAADSDS 220
+VGF +LGGKDDF+T+ LE + + +I + + + RR VR S +DSDS
Sbjct: 151 YVVGFNELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSDS 210
Query: 219 D 217
+
Sbjct: 211 E 211
>gb|AAM65963.1| putative ATP binding protein [Arabidopsis thaliana]
Length = 210
Score = 94.7 bits (234), Expect = 7e-19
Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Frame = -1
Query: 567 FYR----CKIMDKHLKDLSPKHIDTKFIKLDAENAPFFVAKLQVKTLPCIILFRQGVAFD 400
FYR CK+MDKH+ L+ +HI+T+F+K+ AE +PF +L++ LP + L + D
Sbjct: 91 FYRENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDD 150
Query: 399 RLVGFQDLGGKDDFTTKKLEAMLIKKGIIDDKKNQNDEEAEYDESARRTVRTSVAADSDS 220
+VGF +LGGKDDF+T+ LE + + +I + ++ + + RR VR S +DSDS
Sbjct: 151 YVVGFNELGGKDDFSTEDLEERIARAQVI-HYEGESSLKQKSTTQVRRNVRQSARSDSDS 209
Query: 219 D 217
+
Sbjct: 210 E 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,412,597
Number of Sequences: 1393205
Number of extensions: 8545170
Number of successful extensions: 25372
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 24030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25315
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
