Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017957A_C01 KMC017957A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565484.1| expressed protein; protein id: At2g20760.1, sup... 104 9e-22
gb|AAM61043.1| unknown [Arabidopsis thaliana] 104 9e-22
ref|NP_565921.1| expressed protein; protein id: At2g40060.1, sup... 80 2e-14
gb|AAM65809.1| unknown [Arabidopsis thaliana] 80 2e-14
pir||T51160 hypothetical protein [imported] - Arabidopsis thalia... 64 1e-09
>ref|NP_565484.1| expressed protein; protein id: At2g20760.1, supported by cDNA:
108956., supported by cDNA: gi_15982816, supported by
cDNA: gi_16323100 [Arabidopsis thaliana]
gi|25411992|pir||A84593 hypothetical protein At2g20760
[imported] - Arabidopsis thaliana
gi|4454472|gb|AAD20919.1| expressed protein [Arabidopsis
thaliana] gi|15982817|gb|AAL09756.1| At2g20760/F5H14.27
[Arabidopsis thaliana] gi|16323101|gb|AAL15285.1|
At2g20760/F5H14.27 [Arabidopsis thaliana]
Length = 338
Score = 104 bits (259), Expect = 9e-22
Identities = 55/109 (50%), Positives = 68/109 (61%), Gaps = 9/109 (8%)
Frame = -3
Query: 579 EKRRGKKDQEKKPSITVIHGP--GKPTDLSRMRQILLKLKHTPPAHMIPPPPPPAPAKDS 406
EK+RGKKD +KKPS+ VI GP GKPTDL RMRQI LKLK PP HM+PPPPP AKD
Sbjct: 200 EKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPHMMPPPPPAKDAKDG 259
Query: 405 KD-KDGKETASKPNGTAPEGAPES------QPRDAATNDSTTDLPQKEA 280
KD KDGK+ + +G +G ++ +P D + P K+A
Sbjct: 260 KDAKDGKDAKTGKDGKDAKGGKDAKDLKDGKPADPKVTEEKRPSPAKDA 308
>gb|AAM61043.1| unknown [Arabidopsis thaliana]
Length = 338
Score = 104 bits (259), Expect = 9e-22
Identities = 55/109 (50%), Positives = 68/109 (61%), Gaps = 9/109 (8%)
Frame = -3
Query: 579 EKRRGKKDQEKKPSITVIHGP--GKPTDLSRMRQILLKLKHTPPAHMIPPPPPPAPAKDS 406
EK+RGKKD +KKPS+ VI GP GKPTDL RMRQI LKLK PP HM+PPPPP AKD
Sbjct: 200 EKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTNPPPHMMPPPPPAKDAKDG 259
Query: 405 KD-KDGKETASKPNGTAPEGAPES------QPRDAATNDSTTDLPQKEA 280
KD KDGK+ + +G +G ++ +P D + P K+A
Sbjct: 260 KDAKDGKDAKAGKDGKDAKGGKDAKDLKDGKPADPKVTEEKRPSPAKDA 308
>ref|NP_565921.1| expressed protein; protein id: At2g40060.1, supported by cDNA:
5046., supported by cDNA: gi_20260191 [Arabidopsis
thaliana] gi|25366606|pir||G84824 hypothetical protein
At2g40060 [imported] - Arabidopsis thaliana
gi|2088662|gb|AAB95291.1| expressed protein [Arabidopsis
thaliana] gi|20260192|gb|AAM12994.1| unknown protein
[Arabidopsis thaliana] gi|21387051|gb|AAM47929.1|
unknown protein [Arabidopsis thaliana]
Length = 258
Score = 79.7 bits (195), Expect = 2e-14
Identities = 45/92 (48%), Positives = 60/92 (64%), Gaps = 4/92 (4%)
Frame = -3
Query: 579 EKRRGKKDQE--KKPSITVIHGP--GKPTDLSRMRQILLKLKHTPPAHMIPPPPPPAPAK 412
EKRRGKK+Q+ KKP+++VI GP GKPTDL+RMRQIL+KLKH PP+H+ PP+
Sbjct: 180 EKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPS--- 236
Query: 411 DSKDKDGKETASKPNGTAPEGAPESQPRDAAT 316
E A+ P P+ PE++P +A T
Sbjct: 237 --------EEAAAP----PKNVPETKPTEAVT 256
>gb|AAM65809.1| unknown [Arabidopsis thaliana]
Length = 258
Score = 79.7 bits (195), Expect = 2e-14
Identities = 45/92 (48%), Positives = 60/92 (64%), Gaps = 4/92 (4%)
Frame = -3
Query: 579 EKRRGKKDQE--KKPSITVIHGP--GKPTDLSRMRQILLKLKHTPPAHMIPPPPPPAPAK 412
EKRRGKK+Q+ KKP+++VI GP GKPTDL+RMRQIL+KLKH PP+H+ PP+
Sbjct: 180 EKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPPS--- 236
Query: 411 DSKDKDGKETASKPNGTAPEGAPESQPRDAAT 316
E A+ P P+ PE++P +A T
Sbjct: 237 --------EEAAAP----PKNVPETKPTEAVT 256
>pir||T51160 hypothetical protein [imported] - Arabidopsis thaliana
gi|3068716|gb|AAC14416.1| unknown [Arabidopsis thaliana]
Length = 233
Score = 63.9 bits (154), Expect = 1e-09
Identities = 34/56 (60%), Positives = 39/56 (68%), Gaps = 2/56 (3%)
Frame = -3
Query: 576 KRRGKKDQEKKPSITVIHGP--GKPTDLSRMRQILLKLKHTPPAHMIPPPPPPAPA 415
+ RG K +K +ITVI GP GKPTDLSRMRQ+L KLKH PP HM P P P+ A
Sbjct: 164 ENRGNK--KKTATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPSGA 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,617,103
Number of Sequences: 1393205
Number of extensions: 12818594
Number of successful extensions: 131995
Number of sequences better than 10.0: 1200
Number of HSP's better than 10.0 without gapping: 68212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105952
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
