Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017956A_C01 KMC017956A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32441.1|AF377344_1 Fe-superoxide dismutase precursor [Medi... 204 8e-52
gb|AAC63378.1| iron superoxide dismutase [Zantedeschia aethiopica] 168 5e-41
ref|NP_199923.1| iron superoxide dismutase, putative; protein id... 159 3e-38
emb|CAA73188.1| superoxide dismutase [Arabidopsis thaliana] 159 3e-38
gb|AAF28773.1|AF077224_1 iron-superoxide dismutase precursor [Vi... 158 5e-38
>gb|AAL32441.1|AF377344_1 Fe-superoxide dismutase precursor [Medicago sativa]
Length = 313
Score = 204 bits (519), Expect = 8e-52
Identities = 100/129 (77%), Positives = 120/129 (92%), Gaps = 3/129 (2%)
Frame = -2
Query: 620 AWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYY-PLLTIDVWEHAYYLD 444
AWLAYKE+RLDVGNA+NPLA++EDKKLVV+K+PNAVNPLVW ++ PLLTIDVWEHAYYLD
Sbjct: 185 AWLAYKESRLDVGNAVNPLATEEDKKLVVLKSPNAVNPLVWNHHHPLLTIDVWEHAYYLD 244
Query: 443 YQNRRPDFISVFIDKLVSWEAVSSRLEQAKAIVAEKEREDERRRTEEEEKSTIRE-TP-H 270
YQNRRP++ISVF+DKLVSWEAVSSRLE+AKA++AE+E+E+ER+R EEEEKST E TP
Sbjct: 245 YQNRRPEYISVFMDKLVSWEAVSSRLEKAKAVIAEREKEEERKRREEEEKSTTGEDTPAP 304
Query: 269 EIFPDNDSD 243
EIF D+D+D
Sbjct: 305 EIFADSDTD 313
>gb|AAC63378.1| iron superoxide dismutase [Zantedeschia aethiopica]
Length = 309
Score = 168 bits (426), Expect = 5e-41
Identities = 79/133 (59%), Positives = 100/133 (74%), Gaps = 7/133 (5%)
Frame = -2
Query: 620 AWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYYPLLTIDVWEHAYYLDY 441
AWL YK NRLDVGNA+NP +++D KL++ KTPNAVNPL+W Y P+L +DVWEHAYYLDY
Sbjct: 172 AWLVYKANRLDVGNAVNPCPTEKDYKLIIEKTPNAVNPLIWDYNPILVVDVWEHAYYLDY 231
Query: 440 QNRRPDFISVFIDKLVSWEAVSSRLE-----QAKAIVAEKEREDERRRTEEEEKSTIRET 276
QNRRPDF+S F+DKL+SWEA S+RLE A+A AE+ RE+E RR EEEE R+
Sbjct: 232 QNRRPDFVSTFMDKLISWEAASARLEAAMAQAAEAQAAERAREEEERRKEEEEDEETRDD 291
Query: 275 --PHEIFPDNDSD 243
+++ D+D D
Sbjct: 292 GGDMKMYVDSDDD 304
>ref|NP_199923.1| iron superoxide dismutase, putative; protein id: At5g51100.1,
supported by cDNA: 126592. [Arabidopsis thaliana]
gi|8843846|dbj|BAA97372.1| contains similarity to
iron-containing superoxide dismutase~gene_id:MWD22.4
[Arabidopsis thaliana] gi|21537292|gb|AAM61633.1|
Fe-superoxide dismutase precursor [Arabidopsis thaliana]
gi|28393352|gb|AAO42100.1| putative iron superoxide
dismutase [Arabidopsis thaliana]
gi|28827610|gb|AAO50649.1| putative iron superoxide
dismutase [Arabidopsis thaliana]
Length = 305
Score = 159 bits (402), Expect = 3e-38
Identities = 79/125 (63%), Positives = 95/125 (75%)
Frame = -2
Query: 617 WLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYYPLLTIDVWEHAYYLDYQ 438
WLAYK NRLDV NA+NPL +EDKKLV+VKTPNAVNPLVW Y PLLTID WEHAYYLD++
Sbjct: 180 WLAYKANRLDVANAVNPLPKEEDKKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFE 239
Query: 437 NRRPDFISVFIDKLVSWEAVSSRLEQAKAIVAEKEREDERRRTEEEEKSTIRETPHEIFP 258
NRR ++I+ F++KLVSWE VS+RLE AI +RE E TE+EE E P E++
Sbjct: 240 NRRAEYINTFMEKLVSWETVSTRLE--SAIARAVQREQEGTETEDEENPD-DEVP-EVYL 295
Query: 257 DNDSD 243
D+D D
Sbjct: 296 DSDID 300
>emb|CAA73188.1| superoxide dismutase [Arabidopsis thaliana]
Length = 154
Score = 159 bits (402), Expect = 3e-38
Identities = 79/125 (63%), Positives = 95/125 (75%)
Frame = -2
Query: 617 WLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWGYYPLLTIDVWEHAYYLDYQ 438
WLAYK NRLDV NA+NPL +EDKKLV+VKTPNAVNPLVW Y PLLTID WEHAYYLD++
Sbjct: 29 WLAYKANRLDVANAVNPLPKEEDKKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFE 88
Query: 437 NRRPDFISVFIDKLVSWEAVSSRLEQAKAIVAEKEREDERRRTEEEEKSTIRETPHEIFP 258
NRR ++I+ F++KLVSWE VS+RLE AI +RE E TE+EE E P E++
Sbjct: 89 NRRAEYINTFMEKLVSWETVSTRLE--SAIARAVQREQEGTETEDEENPD-DEVP-EVYL 144
Query: 257 DNDSD 243
D+D D
Sbjct: 145 DSDID 149
>gb|AAF28773.1|AF077224_1 iron-superoxide dismutase precursor [Vigna unguiculata]
Length = 245
Score = 158 bits (400), Expect = 5e-38
Identities = 75/94 (79%), Positives = 86/94 (90%), Gaps = 1/94 (1%)
Frame = -2
Query: 620 AWLAYKENRLDVGNAINPLASDEDKKLVVVKTPNAVNPLVWG-YYPLLTIDVWEHAYYLD 444
AWLAYK ++LD NA NP ++DED KLVV+K+PNAVNPLVWG YYPLLTIDVWEHAYYLD
Sbjct: 152 AWLAYKASKLDGENAANPPSADEDNKLVVIKSPNAVNPLVWGGYYPLLTIDVWEHAYYLD 211
Query: 443 YQNRRPDFISVFIDKLVSWEAVSSRLEQAKAIVA 342
+QNRRPD+ISVF+DKLVSW+AVSSRLEQAKA+ A
Sbjct: 212 FQNRRPDYISVFMDKLVSWDAVSSRLEQAKALSA 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,047,555
Number of Sequences: 1393205
Number of extensions: 9822315
Number of successful extensions: 44331
Number of sequences better than 10.0: 556
Number of HSP's better than 10.0 without gapping: 33611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41027
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
