Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017955A_C02 KMC017955A_c02
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana] 37 0.24
ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [... 37 0.24
gb|EAA22192.1| hypothetical protein [Plasmodium yoelii yoelii] 33 3.4
gb|EAA39968.1| GLP_10_49643_44829 [Giardia lamblia ATCC 50803] 32 4.5
gb|EAA19845.1| putative yir4 protein [Plasmodium yoelii yoelii] 32 4.5
>gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana]
Length = 1840
Score = 36.6 bits (83), Expect = 0.24
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2
Query: 290 DSTLDPIESQRVVELMNSELSPCSS*NPRNF 198
D LDP+ESQ VV+L+N EL+ NPR+F
Sbjct: 1140 DGGLDPVESQGVVDLLNRELTRLLKLNPRDF 1170
>ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [Arabidopsis thaliana]
Length = 1975
Score = 36.6 bits (83), Expect = 0.24
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = -2
Query: 290 DSTLDPIESQRVVELMNSELSPCSS*NPRNF 198
D LDP+ESQ VV+L+N EL+ NPR+F
Sbjct: 1208 DGGLDPVESQGVVDLLNRELTRLLKLNPRDF 1238
>gb|EAA22192.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 4464
Score = 32.7 bits (73), Expect = 3.4
Identities = 17/52 (32%), Positives = 31/52 (58%), Gaps = 3/52 (5%)
Frame = -2
Query: 149 TMLVQNSLRSITQ--CIKIVAFRISHIVLPFIWHTCTL-NP*MRKSYVNFVQ 3
T+ +++ LR I C+K+ S V+PF++H T+ P +R+ ++NF Q
Sbjct: 2882 TLWIESVLRLIALQICLKVKPLNDSRYVVPFLYHMLTICQPLLREVHINFEQ 2933
>gb|EAA39968.1| GLP_10_49643_44829 [Giardia lamblia ATCC 50803]
Length = 1604
Score = 32.3 bits (72), Expect = 4.5
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 325 FATKQHSLLVKVTLLWIPSNLKELLN-S*IQSCLLAQVETQGILETGTYF 179
F+T+ +SL+VKV+ L + +LK LL IQ + ++ I ET TYF
Sbjct: 1065 FSTEDYSLIVKVSSLMLNKSLKSLLAFHMIQLIVEKNIDVPEIYETMTYF 1114
>gb|EAA19845.1| putative yir4 protein [Plasmodium yoelii yoelii]
Length = 324
Score = 32.3 bits (72), Expect = 4.5
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = +1
Query: 304 DYVALWQSLVGLHNKLVNTCSSIFHLFVQLKPLTSKLSENSGHCVDY 444
DY+ L + +G+ N NT S + F L + ++ EN+ +C +Y
Sbjct: 135 DYIGLIDTKMGVLNMDSNTASKFYKAFKSLCEIYTEFDENTSNCTNY 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,995,035
Number of Sequences: 1393205
Number of extensions: 10017246
Number of successful extensions: 24141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24140
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
