Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017953A_C01 KMC017953A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195062.1| putative protein; protein id: At4g33360.1, supp... 119 3e-36
gb|AAK59445.2| unknown protein [Arabidopsis thaliana] 119 3e-36
gb|AAK92621.1|AC079633_1 Putative dihydroflavonal-4-reductase [O... 110 8e-34
gb|ZP_00027062.1| hypothetical protein [Ralstonia metallidurans] 49 8e-09
ref|ZP_00030955.1| hypothetical protein [Burkholderia fungorum] 49 6e-08
>ref|NP_195062.1| putative protein; protein id: At4g33360.1, supported by cDNA:
gi_13926212 [Arabidopsis thaliana]
gi|7431376|pir||T05987 hypothetical protein F17M5.120 -
Arabidopsis thaliana gi|4490303|emb|CAB38794.1| putative
protein [Arabidopsis thaliana]
gi|7270284|emb|CAB80053.1| putative protein [Arabidopsis
thaliana] gi|13926213|gb|AAK49584.1|AF370578_1 putative
protein [Arabidopsis thaliana]
gi|26983846|gb|AAN86175.1| unknown protein [Arabidopsis
thaliana]
Length = 344
Score = 119 bits (299), Expect(2) = 3e-36
Identities = 57/78 (73%), Positives = 63/78 (80%)
Frame = -2
Query: 571 IAAMEKGELGNRYLLTGETASFNQVFDMAAMITNTKRPMISIPLWVILVYGWISVLFSRI 392
+AAMEKG LG RYLLTGE ASF VFDMAA+IT TK+P SIPLW I YGW+SVL SR+
Sbjct: 229 VAAMEKGRLGERYLLTGENASFKLVFDMAALITGTKKPNFSIPLWAINAYGWLSVLISRV 288
Query: 391 TGKLPFITPQTVHVLRHQ 338
TGKLP I+P TV VLRHQ
Sbjct: 289 TGKLPLISPPTVTVLRHQ 306
Score = 53.9 bits (128), Expect(2) = 3e-36
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -3
Query: 333 WEYSCEKAKRELDYNPRSLSDGLAEVLLCLKNAGLIKY 220
W YSC+KAK EL YNPRSL +GL E+L LK+ G+I Y
Sbjct: 307 WSYSCDKAKLELGYNPRSLKEGLEEMLPWLKSLGVIHY 344
>gb|AAK59445.2| unknown protein [Arabidopsis thaliana]
Length = 338
Score = 119 bits (299), Expect(2) = 3e-36
Identities = 57/78 (73%), Positives = 63/78 (80%)
Frame = -2
Query: 571 IAAMEKGELGNRYLLTGETASFNQVFDMAAMITNTKRPMISIPLWVILVYGWISVLFSRI 392
+AAMEKG LG RYLLTGE ASF VFDMAA+IT TK+P SIPLW I YGW+SVL SR+
Sbjct: 223 VAAMEKGRLGERYLLTGENASFKLVFDMAALITGTKKPNFSIPLWAINAYGWLSVLISRV 282
Query: 391 TGKLPFITPQTVHVLRHQ 338
TGKLP I+P TV VLRHQ
Sbjct: 283 TGKLPLISPPTVTVLRHQ 300
Score = 53.9 bits (128), Expect(2) = 3e-36
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -3
Query: 333 WEYSCEKAKRELDYNPRSLSDGLAEVLLCLKNAGLIKY 220
W YSC+KAK EL YNPRSL +GL E+L LK+ G+I Y
Sbjct: 301 WSYSCDKAKLELGYNPRSLKEGLEEMLPWLKSLGVIHY 338
>gb|AAK92621.1|AC079633_1 Putative dihydroflavonal-4-reductase [Oryza sativa]
Length = 341
Score = 110 bits (274), Expect(2) = 8e-34
Identities = 52/78 (66%), Positives = 60/78 (76%)
Frame = -2
Query: 571 IAAMEKGELGNRYLLTGETASFNQVFDMAAMITNTKRPMISIPLWVILVYGWISVLFSRI 392
+AAMEKG G RYLLTGE S Q+FDMA+ ITNTK P +PLW++ +YGWISVL SRI
Sbjct: 226 VAAMEKGREGERYLLTGENTSLVQIFDMASRITNTKAPRFHVPLWLLEIYGWISVLVSRI 285
Query: 391 TGKLPFITPQTVHVLRHQ 338
TGKLPFI+ V VLRHQ
Sbjct: 286 TGKLPFISYPAVRVLRHQ 303
Score = 55.5 bits (132), Expect(2) = 8e-34
Identities = 23/38 (60%), Positives = 33/38 (86%)
Frame = -3
Query: 333 WEYSCEKAKRELDYNPRSLSDGLAEVLLCLKNAGLIKY 220
W YSCEKAK+EL Y+PRSL++GL+E LL LK++ +I++
Sbjct: 304 WAYSCEKAKKELGYSPRSLTEGLSETLLWLKDSEMIRF 341
>gb|ZP_00027062.1| hypothetical protein [Ralstonia metallidurans]
Length = 369
Score = 48.9 bits (115), Expect(2) = 8e-09
Identities = 22/66 (33%), Positives = 35/66 (52%)
Frame = -2
Query: 565 AMEKGELGNRYLLTGETASFNQVFDMAAMITNTKRPMISIPLWVILVYGWISVLFSRITG 386
A++KG +G RY+L G+ Q+ A + K P I +P W + ++ +R TG
Sbjct: 257 ALDKGRIGERYILGGQDVLLRQMLADIADMAGRKAPTIELPRWPLYPVARVAETIARFTG 316
Query: 385 KLPFIT 368
K PF+T
Sbjct: 317 KEPFVT 322
Score = 32.3 bits (72), Expect(2) = 8e-09
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 327 YSCEKAKRELDYNPRSLSDGLAEVLLCLKNAGLIK 223
++ KA+REL Y PR +GL + L + AG +K
Sbjct: 335 FTSAKAQRELGYAPRPYQEGLRDALTWFREAGYLK 369
>ref|ZP_00030955.1| hypothetical protein [Burkholderia fungorum]
Length = 336
Score = 48.9 bits (115), Expect(2) = 6e-08
Identities = 22/66 (33%), Positives = 37/66 (55%)
Frame = -2
Query: 565 AMEKGELGNRYLLTGETASFNQVFDMAAMITNTKRPMISIPLWVILVYGWISVLFSRITG 386
A+E+G++G RY+L GE Q+ A +T K P +S+P W + + ++IT
Sbjct: 223 ALERGKIGERYILGGENLPLQQMLADIAALTGRKAPTLSLPRWPLYPLAMGAEAIAKITK 282
Query: 385 KLPFIT 368
+ PF+T
Sbjct: 283 REPFVT 288
Score = 29.3 bits (64), Expect(2) = 6e-08
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 327 YSCEKAKRELDYNPRSLSDGLAEVLLCLKNAGLIK 223
++ KA+REL Y R +GL + L + AG +K
Sbjct: 301 FTSAKAERELGYRARPYREGLGDALEWFRQAGYLK 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,010,378
Number of Sequences: 1393205
Number of extensions: 10996303
Number of successful extensions: 21350
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 20893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21349
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
