Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017952A_C01 KMC017952A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563794.1| Expressed protein; protein id: At1g07700.1, sup... 140 1e-32
pir||A86212 hypothetical protein [imported] - Arabidopsis thalia... 89 4e-17
gb|AAO72714.1| thioredoxin 1 [Melopsittacus undulatus] 43 0.002
sp|P08629|THIO_CHICK Thioredoxin gi|86443|pir||A30006 thioredoxi... 42 0.004
gb|AAC49356.1| thioredoxin h 42 0.004
>ref|NP_563794.1| Expressed protein; protein id: At1g07700.1, supported by cDNA:
gi_13507558, supported by cDNA: gi_15293296 [Arabidopsis
thaliana] gi|13507559|gb|AAK28642.1|AF360345_1 unknown
protein [Arabidopsis thaliana]
gi|15293297|gb|AAK93759.1| unknown protein [Arabidopsis
thaliana]
Length = 204
Score = 140 bits (352), Expect = 1e-32
Identities = 65/84 (77%), Positives = 78/84 (92%)
Frame = -3
Query: 541 SCKYIEQGFAKLCRKSGNHDAPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGIL 362
SCKYIEQGF+KLC++SG+ +APVIFLKHNV+DEYDE+SEVAERLRI+AVPLFHFYK+G+L
Sbjct: 121 SCKYIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVL 180
Query: 361 LEAFPTRDKARIVEAILKYSSLEA 290
LE+F TRDK RI AILKY+S E+
Sbjct: 181 LESFATRDKERIDAAILKYTSSES 204
>pir||A86212 hypothetical protein [imported] - Arabidopsis thaliana
gi|8439899|gb|AAF75085.1|AC007583_21 It contains
thioredoxin domain PF|00085. EST gb|AI999448 comes from
this gene. [Arabidopsis thaliana]
Length = 231
Score = 88.6 bits (218), Expect = 4e-17
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = -3
Query: 454 VIDEYDEESEVAERLRIRAVPLFHFYKDGILLEAFPTRDKARIVEAILKYSSLEA 290
V+DEYDE+SEVAERLRI+AVPLFHFYK+G+LLE+F TRDK RI AILKY+S E+
Sbjct: 177 VVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSSES 231
>gb|AAO72714.1| thioredoxin 1 [Melopsittacus undulatus]
Length = 105
Score = 43.1 bits (100), Expect = 0.002
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = -3
Query: 538 CKYIEQGFAKLCRKSGNHDAPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGILL 359
CK I+ F LC K G+ V+F++ +V D+ +VA ++ +P F FYK+G +
Sbjct: 35 CKMIKPFFHSLCEKYGD----VVFIEIDV----DDAQDVAAHCDVKCMPTFQFYKNGKKV 86
Query: 358 EAFPTRDKARIVEAI 314
+ F +K ++ E I
Sbjct: 87 QEFSGANKEKLEETI 101
>sp|P08629|THIO_CHICK Thioredoxin gi|86443|pir||A30006 thioredoxin - chicken
gi|212766|gb|AAA49092.1| thioredoxin
Length = 105
Score = 42.4 bits (98), Expect = 0.004
Identities = 24/75 (32%), Positives = 41/75 (54%)
Frame = -3
Query: 538 CKYIEQGFAKLCRKSGNHDAPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGILL 359
CK I+ F LC K G+ V+F++ +V D+ +VA ++ +P F FYK+G +
Sbjct: 35 CKMIKPFFHSLCDKFGD----VVFIEIDV----DDAQDVATHCDVKCMPTFQFYKNGKKV 86
Query: 358 EAFPTRDKARIVEAI 314
+ F +K ++ E I
Sbjct: 87 QEFSGANKEKLEETI 101
>gb|AAC49356.1| thioredoxin h
Length = 119
Score = 42.4 bits (98), Expect = 0.004
Identities = 26/83 (31%), Positives = 44/83 (52%)
Frame = -3
Query: 538 CKYIEQGFAKLCRKSGNHDAPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGILL 359
C++I FA++ +K N V+F K +V DE VA+ ++ A+P F F K+G ++
Sbjct: 42 CRFIAPVFAEMAKKFTN----VVFFKIDV----DELQAVAQEFKVEAMPTFVFMKEGNII 93
Query: 358 EAFPTRDKARIVEAILKYSSLEA 290
+ K I E ++K+ L A
Sbjct: 94 DRVVGAAKDEINEKLMKHGGLVA 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,904,505
Number of Sequences: 1393205
Number of extensions: 10235830
Number of successful extensions: 24817
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 24195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24811
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
