Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017951A_C01 KMC017951A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43384.1| unknown protein [Arabidopsis thaliana] 129 2e-39
ref|NP_176890.1| F-box protein family; protein id: At1g67190.1 [... 129 2e-39
gb|AAO72683.1| unknown [Oryza sativa (japonica cultivar-group)] 117 7e-26
dbj|BAB90562.1| P0489B03.11 [Oryza sativa (japonica cultivar-gro... 117 7e-26
gb|ZP_00105774.1| hypothetical protein [Nostoc punctiforme] 35 0.33
>dbj|BAC43384.1| unknown protein [Arabidopsis thaliana]
Length = 419
Score = 129 bits (323), Expect(2) = 2e-39
Identities = 58/97 (59%), Positives = 74/97 (75%)
Frame = -3
Query: 379 SLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGE 200
SLSYD++ G HY L G LENV +LELGW V+ND+FS WVE LL+RCPNLKKL+I+G
Sbjct: 323 SLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGV 382
Query: 199 VSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 89
VSE K+ +C+I A FT S++QLMR+Y HV+ F +E
Sbjct: 383 VSETKTQGDCQILATFTWSIVQLMRKYIHVEVQFEYE 419
Score = 54.7 bits (130), Expect(2) = 2e-39
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -2
Query: 479 LKKFRLWDVMFDDEDEVVDLETIASCFPHLNHL 381
LKK RLWDV+FDD+DE++D+E+IA+ F HL HL
Sbjct: 290 LKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHL 322
>ref|NP_176890.1| F-box protein family; protein id: At1g67190.1 [Arabidopsis
thaliana] gi|25404672|pir||H96695 hypothetical protein
F5A8.10 [imported] - Arabidopsis thaliana
gi|4204283|gb|AAD10664.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 419
Score = 129 bits (323), Expect(2) = 2e-39
Identities = 58/97 (59%), Positives = 74/97 (75%)
Frame = -3
Query: 379 SLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGE 200
SLSYD++ G HY L G LENV +LELGW V+ND+FS WVE LL+RCPNLKKL+I+G
Sbjct: 323 SLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGV 382
Query: 199 VSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 89
VSE K+ +C+I A FT S++QLMR+Y HV+ F +E
Sbjct: 383 VSETKTQGDCQILATFTWSIVQLMRKYIHVEVQFEYE 419
Score = 54.7 bits (130), Expect(2) = 2e-39
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = -2
Query: 479 LKKFRLWDVMFDDEDEVVDLETIASCFPHLNHL 381
LKK RLWDV+FDD+DE++D+E+IA+ F HL HL
Sbjct: 290 LKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHL 322
>gb|AAO72683.1| unknown [Oryza sativa (japonica cultivar-group)]
Length = 288
Score = 117 bits (293), Expect = 7e-26
Identities = 53/97 (54%), Positives = 76/97 (77%)
Frame = -3
Query: 379 SLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGE 200
SLSY++R G++HY L G++ L+NV +LELGW V+++ F WV G+++RCPNLKKLVIHG
Sbjct: 192 SLSYELRDGLLHYSLQGSSPLDNVSVLELGWTVISEHFGPWVFGMIERCPNLKKLVIHGV 251
Query: 199 VSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 89
+SEAK+ EE ++ A+FT ++ LMR+Y HVD F +E
Sbjct: 252 LSEAKTREERQMLASFTSFIVCLMRKYVHVDVQFEYE 288
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -2
Query: 482 NLKKFRLWDVMFDDEDEVVDLETIASCFPHLNHLISEL*CEIRSGSLWFT 333
NL+ R W V+FDDEDE+VD ETIA FP L HL L E+R G L ++
Sbjct: 158 NLRMLRFWGVVFDDEDEIVDSETIAVSFPLLRHL--SLSYELRDGLLHYS 205
>dbj|BAB90562.1| P0489B03.11 [Oryza sativa (japonica cultivar-group)]
gi|20521239|dbj|BAB91755.1| P0679C12.4 [Oryza sativa
(japonica cultivar-group)]
Length = 417
Score = 117 bits (293), Expect = 7e-26
Identities = 53/97 (54%), Positives = 76/97 (77%)
Frame = -3
Query: 379 SLSYDVRYGVVHYGLLGAAYLENVVILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGE 200
SLSY++R G++HY L G++ L+NV +LELGW V+++ F WV G+++RCPNLKKLVIHG
Sbjct: 321 SLSYELRDGLLHYSLQGSSPLDNVSVLELGWTVISEHFGPWVFGMIERCPNLKKLVIHGV 380
Query: 199 VSEAKSDEECKIFANFTRSMIQLMRRYTHVDPHFNFE 89
+SEAK+ EE ++ A+FT ++ LMR+Y HVD F +E
Sbjct: 381 LSEAKTREERQMLASFTSFIVCLMRKYVHVDVQFEYE 417
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = -2
Query: 482 NLKKFRLWDVMFDDEDEVVDLETIASCFPHLNHLISEL*CEIRSGSLWFT 333
NL+ R W V+FDDEDE+VD ETIA FP L HL L E+R G L ++
Sbjct: 287 NLRMLRFWGVVFDDEDEIVDSETIAVSFPLLRHL--SLSYELRDGLLHYS 334
>gb|ZP_00105774.1| hypothetical protein [Nostoc punctiforme]
Length = 298
Score = 35.4 bits (80), Expect = 0.33
Identities = 24/83 (28%), Positives = 38/83 (44%)
Frame = -3
Query: 304 ILELGWNVLNDLFSHWVEGLLKRCPNLKKLVIHGEVSEAKSDEECKIFANFTRSMIQLMR 125
I + +N L+ L W E LL R P+ H V E K+ +E + + TR ++
Sbjct: 9 IKQAQYNPLHSL-EEWEEDLLNRYPDP-----HSIVKEGKTTQEYRNYETPTRETVKEFY 62
Query: 124 RYTHVDPHFNFE*NSSKCLVKSD 56
R H++ +NF K +K D
Sbjct: 63 RLNHINQTYNFVLEKEKNFLKFD 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,857,701
Number of Sequences: 1393205
Number of extensions: 9295821
Number of successful extensions: 23010
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22996
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
