Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017944A_C01 KMC017944A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P41380|IF43_NICPL Eukaryotic initiation factor 4A-3 (eIF-4A-3... 145 2e-34
pir||T51737 RNA helicase RH2 [imported] - Arabidopsis thaliana g... 145 4e-34
gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana] gi|2509... 145 4e-34
ref|NP_188610.1| eukaryotic translation initiation factor 4A (eI... 145 4e-34
gb|EAA08469.1| agCP3030 [Anopheles gambiae str. PEST] 144 8e-34
>sp|P41380|IF43_NICPL Eukaryotic initiation factor 4A-3 (eIF-4A-3) (eIF4A-3)
gi|100276|pir||S22579 translation initiation factor
eIF-4A - curled-leaved tobacco gi|19699|emb|CAA43514.1|
nicotiana eukaryotic translation initiation factor 4A
[Nicotiana plumbaginifolia]
Length = 391
Score = 145 bits (367), Expect = 2e-34
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = -2
Query: 521 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 342
GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ
Sbjct: 320 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379
Query: 341 IDEMPMNVADLI 306
IDEMPMNVADLI
Sbjct: 380 IDEMPMNVADLI 391
>pir||T51737 RNA helicase RH2 [imported] - Arabidopsis thaliana
gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis
thaliana] gi|9294443|dbj|BAB02563.1| RNA helicase
[Arabidopsis thaliana]
Length = 391
Score = 145 bits (365), Expect = 4e-34
Identities = 71/72 (98%), Positives = 72/72 (99%)
Frame = -2
Query: 521 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 342
G+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ
Sbjct: 320 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 379
Query: 341 IDEMPMNVADLI 306
IDEMPMNVADLI
Sbjct: 380 IDEMPMNVADLI 391
>gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21
[Arabidopsis thaliana]
Length = 408
Score = 145 bits (365), Expect = 4e-34
Identities = 71/72 (98%), Positives = 72/72 (99%)
Frame = -2
Query: 521 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 342
G+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ
Sbjct: 337 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 396
Query: 341 IDEMPMNVADLI 306
IDEMPMNVADLI
Sbjct: 397 IDEMPMNVADLI 408
>ref|NP_188610.1| eukaryotic translation initiation factor 4A (eIF-4A), putative;
protein id: At3g19760.1, supported by cDNA: gi_15215677
[Arabidopsis thaliana]
Length = 408
Score = 145 bits (365), Expect = 4e-34
Identities = 71/72 (98%), Positives = 72/72 (99%)
Frame = -2
Query: 521 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 342
G+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ
Sbjct: 337 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 396
Query: 341 IDEMPMNVADLI 306
IDEMPMNVADLI
Sbjct: 397 IDEMPMNVADLI 408
>gb|EAA08469.1| agCP3030 [Anopheles gambiae str. PEST]
Length = 410
Score = 144 bits (362), Expect = 8e-34
Identities = 70/72 (97%), Positives = 72/72 (99%)
Frame = -2
Query: 521 GLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQ 342
G+DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDI+ILRDIEQYYSTQ
Sbjct: 339 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQ 398
Query: 341 IDEMPMNVADLI 306
IDEMPMNVADLI
Sbjct: 399 IDEMPMNVADLI 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,537,063
Number of Sequences: 1393205
Number of extensions: 8701150
Number of successful extensions: 27303
Number of sequences better than 10.0: 1519
Number of HSP's better than 10.0 without gapping: 25753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27136
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
