Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017936A_C01 KMC017936A_c01
(947 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA74776.1| NAD-dependent isocitrate dehydrogenase [Nicotian... 289 5e-77
gb|AAO61645.1| NAD-dependent isocitrate dehydrogenase beta subun... 278 9e-74
gb|AAO61647.1| NAD-dependent isocitrate dehydrogenase beta subun... 278 9e-74
gb|AAM61498.1| NAD+ dependent isocitrate dehydrogenase subunit 1... 276 3e-73
gb|AAC49964.1| NAD+ dependent isocitrate dehydrogenase subunit 1... 276 3e-73
>emb|CAA74776.1| NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum]
Length = 371
Score = 289 bits (739), Expect = 5e-77
Identities = 143/176 (81%), Positives = 160/176 (90%)
Frame = +2
Query: 104 RRSAPLLKHLLTRSKPGFGSTVPASQRWVTYMHRPGDGSPRAVTLIPGDGIGPLVTGAVE 283
+R+ PLL+HLL+ GF ++ S R VTYM RPGDG+PRAVTLIPGDGIGPLVTGAVE
Sbjct: 3 KRTLPLLRHLLSSPSHGFSHSL-TSTRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVE 61
Query: 284 QVMEAMHAPVYFEKFDVHGTMKAVPAEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLRK 463
QVM+AMHAPVYFE++DVHG MK+VP EV++SIRKNKVCLKGGL TP+GGGVSSLNVQLRK
Sbjct: 62 QVMDAMHAPVYFERYDVHGDMKSVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLRK 121
Query: 464 ELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVLT 631
ELDLYASLV+CFNL GLPTRH+NVDIVVIRENTEGEYSGLEHEVVPGVVESLKV+T
Sbjct: 122 ELDLYASLVHCFNLQGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVMT 177
>gb|AAO61645.1| NAD-dependent isocitrate dehydrogenase beta subunit [Brassica
napus] gi|28974500|gb|AAO61646.1| NAD-dependent
isocitrate dehydrogenase beta subunit [Brassica napus]
Length = 367
Score = 278 bits (711), Expect = 9e-74
Identities = 142/177 (80%), Positives = 153/177 (86%)
Frame = +2
Query: 101 TRRSAPLLKHLLTRSKPGFGSTVPASQRWVTYMHRPGDGSPRAVTLIPGDGIGPLVTGAV 280
+RRS LLK+L S T R VTYM RPGDGSPRAVTLIPGDGIGPLVT AV
Sbjct: 2 SRRSLTLLKNLARNSNASCIQT-----RSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAV 56
Query: 281 EQVMEAMHAPVYFEKFDVHGTMKAVPAEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLR 460
EQVMEAMHAP+YFEK+DV G M VPAEV++SIRKNKVCLKGGL TP+GGGVSSLNVQLR
Sbjct: 57 EQVMEAMHAPIYFEKYDVQGEMSRVPAEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLR 116
Query: 461 KELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVLT 631
KELDL+ASLVNCFNLPGLPTRH+NVDIVVIRENTEGEY+GLEHEVVPGVVESLKV+T
Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
>gb|AAO61647.1| NAD-dependent isocitrate dehydrogenase beta subunit [Brassica
napus]
Length = 367
Score = 278 bits (711), Expect = 9e-74
Identities = 142/177 (80%), Positives = 153/177 (86%)
Frame = +2
Query: 101 TRRSAPLLKHLLTRSKPGFGSTVPASQRWVTYMHRPGDGSPRAVTLIPGDGIGPLVTGAV 280
+RRS LLK+L S T R VTYM RPGDGSPRAVTLIPGDGIGPLVT AV
Sbjct: 2 SRRSLTLLKNLARNSNASCIQT-----RSVTYMPRPGDGSPRAVTLIPGDGIGPLVTNAV 56
Query: 281 EQVMEAMHAPVYFEKFDVHGTMKAVPAEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLR 460
EQVMEAMHAP+YFEK+DV G M VPAEV++SIRKNKVCLKGGL TP+GGGVSSLNVQLR
Sbjct: 57 EQVMEAMHAPIYFEKYDVQGEMSRVPAEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLR 116
Query: 461 KELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVLT 631
KELDL+ASLVNCFNLPGLPTRH+NVDIVVIRENTEGEY+GLEHEVVPGVVESLKV+T
Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
>gb|AAM61498.1| NAD+ dependent isocitrate dehydrogenase subunit 1 [Arabidopsis
thaliana]
Length = 367
Score = 276 bits (707), Expect = 3e-73
Identities = 141/177 (79%), Positives = 155/177 (86%)
Frame = +2
Query: 101 TRRSAPLLKHLLTRSKPGFGSTVPASQRWVTYMHRPGDGSPRAVTLIPGDGIGPLVTGAV 280
+RRS LLK+L R+ G G R VTYM RPGDG+PRAVTLIPGDGIGPLVT AV
Sbjct: 2 SRRSLTLLKNL-ARNANGSG----IQTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAV 56
Query: 281 EQVMEAMHAPVYFEKFDVHGTMKAVPAEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLR 460
EQVMEAMHAP++FEK+DVHG M VP EV++SIRKNKVCLKGGL TP+GGGVSSLNVQLR
Sbjct: 57 EQVMEAMHAPIFFEKYDVHGEMSRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLR 116
Query: 461 KELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVLT 631
KELDL+ASLVNCFNLPGLPTRH+NVDIVVIRENTEGEY+GLEHEVVPGVVESLKV+T
Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
>gb|AAC49964.1| NAD+ dependent isocitrate dehydrogenase subunit 1 [Arabidopsis
thaliana]
Length = 367
Score = 276 bits (707), Expect = 3e-73
Identities = 141/177 (79%), Positives = 155/177 (86%)
Frame = +2
Query: 101 TRRSAPLLKHLLTRSKPGFGSTVPASQRWVTYMHRPGDGSPRAVTLIPGDGIGPLVTGAV 280
+RRS LLK+L R+ G G R VTYM RPGDG+PRAVTLIPGDGIGPLVT AV
Sbjct: 2 SRRSLTLLKNL-ARNANGSG----IQTRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAV 56
Query: 281 EQVMEAMHAPVYFEKFDVHGTMKAVPAEVLDSIRKNKVCLKGGLVTPMGGGVSSLNVQLR 460
EQVMEAMHAP++FEK+DVHG M VP EV++SIRKNKVCLKGGL TP+GGGVSSLNVQLR
Sbjct: 57 EQVMEAMHAPIFFEKYDVHGEMSRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLR 116
Query: 461 KELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVLT 631
KELDL+ASLVNCFNLPGLPTRH+NVDIVVIRENTEGEY+GLEHEVVPGVVESLKV+T
Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 934,604,588
Number of Sequences: 1393205
Number of extensions: 25787207
Number of successful extensions: 226808
Number of sequences better than 10.0: 1434
Number of HSP's better than 10.0 without gapping: 112396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196143
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53246406144
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
