Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017928A_C01 KMC017928A_c01
(438 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD16881.1| prespore-specific protein [Dictyostelium discoideum] 32 1.8
gb|EAA21161.1| putative peptidyl prolyl cis-trans isomerase with... 32 1.8
gb|EAA15462.1| putative pre-mRNA splicing factor [Plasmodium yoe... 32 2.3
ref|NP_703568.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.0
gb|EAA22992.1| hypothetical protein [Plasmodium yoelii yoelii] 30 5.2
>gb|AAD16881.1| prespore-specific protein [Dictyostelium discoideum]
Length = 1231
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = +1
Query: 7 SSYNNSSGFHNQVITLQFRAYKISGSKH*RNNKPNKIKKEKKNPQK 144
++ NN+S FHN+VI + SG ++ NN + +K KN K
Sbjct: 944 NNINNNSDFHNRVID-----FSNSGPRNSNNNSDSNLKSNNKNSDK 984
>gb|EAA21161.1| putative peptidyl prolyl cis-trans isomerase with RNA binding
region [Plasmodium yoelii yoelii]
Length = 899
Score = 32.0 bits (71), Expect = 1.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 13 YNNSSGFHNQVITLQFRAYKISGSKH*RNNKPNKIKKEKKN 135
YN SG +N +I ++ YK +G ++ + K NK +KE ++
Sbjct: 424 YNKHSGRNNSIINKKYYGYKNNGHENDGDTKYNKYRKEARS 464
>gb|EAA15462.1| putative pre-mRNA splicing factor [Plasmodium yoelii yoelii]
Length = 1172
Score = 31.6 bits (70), Expect = 2.3
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 285 KQNKIPKPGSKV*DIMLRNKHDQSNSQLSHN*SSSMPAGLSPLLG 419
KQ K+PK D ++ NK ++SNS L+++ SS GL LG
Sbjct: 152 KQKKMPKNYLPAPDSLIMNKLNESNSHLNYSASSENNNGLKTPLG 196
>ref|NP_703568.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504710|emb|CAD51588.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 9341
Score = 30.8 bits (68), Expect = 4.0
Identities = 26/82 (31%), Positives = 42/82 (50%), Gaps = 7/82 (8%)
Frame = +1
Query: 94 RNNKPNKIKKEKKNPQKGLEQQ*C------SLTHENHQSRKRTNKIYRSRLLVTQLKSTI 255
RN + NKI K+KKN K E++ + EN +S+K TNK +++L T +
Sbjct: 5805 RNVQNNKIGKDKKNKSKDTEREKLIYSIKNTKKLENIESQKCTNK--DNKILYTSFSNKN 5862
Query: 256 KT*NVGSHY*NKTR-YLSQVAK 318
+ NV Y K R ++ ++K
Sbjct: 5863 EIFNVQDKYTYKERKHIKDISK 5884
>gb|EAA22992.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 418
Score = 30.4 bits (67), Expect = 5.2
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 6/34 (17%)
Frame = -2
Query: 230 KRRDL*ILLVRFRDWWFSCV------SEHYCCSK 147
K D+ + L F WW +CV EH CC+K
Sbjct: 192 KNNDMNLYLGTFDPWWLNCVIKKMEIPEHICCNK 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,429,919
Number of Sequences: 1393205
Number of extensions: 7395184
Number of successful extensions: 16439
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16409
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
