Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017913A_C01 KMC017913A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC57324.1| putative microtubule-associated protein [Oryza s... 96 8e-20
ref|NP_567836.1| putative protein; protein id: At4g29950.1, supp... 93 6e-19
pir||T52329 microtubule-associated protein [imported] - Arabidop... 93 6e-19
pir||T08556 hypothetical protein F27B13.190 - Arabidopsis thalia... 93 6e-19
ref|NP_179514.1| hypothetical protein; protein id: At2g19240.1 [... 67 5e-11
>dbj|BAC57324.1| putative microtubule-associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 834
Score = 96.3 bits (238), Expect = 8e-20
Identities = 56/110 (50%), Positives = 75/110 (67%), Gaps = 2/110 (1%)
Frame = -1
Query: 434 EKRGGASEAEKPANNCNDQSNRAPSSADGNCSSSSCKGESVDQNVIDTLRNLGQSMLEHI 255
EK G + A+K + ++ +PS + N S S K S D+ V+ +L+NLGQ+MLE+I
Sbjct: 729 EKSSGETSADKQ----DGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENI 784
Query: 254 QVIESTFQQ--GQGASMDIMSKNVVGGKGQVAAISALKELRKISNLLSEM 111
QVIES FQQ GQ ++ S N++GGKGQV A++AL ELRKISNLLSEM
Sbjct: 785 QVIESAFQQDRGQPGPVENFSNNILGGKGQVTAMAALTELRKISNLLSEM 834
>ref|NP_567836.1| putative protein; protein id: At4g29950.1, supported by cDNA:
gi_5032257 [Arabidopsis thaliana]
Length = 703
Score = 93.2 bits (230), Expect = 6e-19
Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Frame = -1
Query: 434 EKRGGASEAEKPANNCNDQSNRAPSSADGNCSSSSCKGESVDQNVIDTLRNLGQSMLEHI 255
E R E+ K C+ +S+ P + SSS KG++ DQNV++TL+NLG SMLEHI
Sbjct: 598 ETRCNGVESSKSDLVCSSESHSLPQA-----SSSGSKGDT-DQNVMNTLKNLGNSMLEHI 651
Query: 254 QVIESTFQQGQG----ASMDIMSKNVVGGKGQVAAISALKELRKISNLLSEM 111
QVIES FQQ +G ++ +SKN + KGQV A++ALKELRKISNLL EM
Sbjct: 652 QVIESVFQQERGQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 703
>pir||T52329 microtubule-associated protein [imported] - Arabidopsis thaliana
gi|5032258|gb|AAD37016.2| microtubule-associated protein
[Arabidopsis thaliana]
Length = 682
Score = 93.2 bits (230), Expect = 6e-19
Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Frame = -1
Query: 434 EKRGGASEAEKPANNCNDQSNRAPSSADGNCSSSSCKGESVDQNVIDTLRNLGQSMLEHI 255
E R E+ K C+ +S+ P + SSS KG++ DQNV++TL+NLG SMLEHI
Sbjct: 577 ETRCNGVESSKSDLVCSSESHSLPQA-----SSSGSKGDT-DQNVMNTLKNLGNSMLEHI 630
Query: 254 QVIESTFQQGQG----ASMDIMSKNVVGGKGQVAAISALKELRKISNLLSEM 111
QVIES FQQ +G ++ +SKN + KGQV A++ALKELRKISNLL EM
Sbjct: 631 QVIESVFQQERGQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 682
>pir||T08556 hypothetical protein F27B13.190 - Arabidopsis thaliana
gi|4914419|emb|CAB43670.1| putative protein [Arabidopsis
thaliana] gi|7269894|emb|CAB79753.1| putative protein
[Arabidopsis thaliana] gi|18377650|gb|AAL66975.1| unknown
protein [Arabidopsis thaliana] gi|20465437|gb|AAM20178.1|
unknown protein [Arabidopsis thaliana]
Length = 828
Score = 93.2 bits (230), Expect = 6e-19
Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 4/112 (3%)
Frame = -1
Query: 434 EKRGGASEAEKPANNCNDQSNRAPSSADGNCSSSSCKGESVDQNVIDTLRNLGQSMLEHI 255
E R E+ K C+ +S+ P + SSS KG++ DQNV++TL+NLG SMLEHI
Sbjct: 723 ETRCNGVESSKSDLVCSSESHSLPQA-----SSSGSKGDT-DQNVMNTLKNLGNSMLEHI 776
Query: 254 QVIESTFQQGQG----ASMDIMSKNVVGGKGQVAAISALKELRKISNLLSEM 111
QVIES FQQ +G ++ +SKN + KGQV A++ALKELRKISNLL EM
Sbjct: 777 QVIESVFQQERGQVQAGLIENLSKNNLVEKGQVTAMTALKELRKISNLLLEM 828
>ref|NP_179514.1| hypothetical protein; protein id: At2g19240.1 [Arabidopsis thaliana]
gi|7486249|pir||T01272 hypothetical protein At2g19240
[imported] - Arabidopsis thaliana
gi|3135254|gb|AAC16454.1| hypothetical protein
[Arabidopsis thaliana]
Length = 840
Score = 67.0 bits (162), Expect = 5e-11
Identities = 48/108 (44%), Positives = 67/108 (61%), Gaps = 5/108 (4%)
Frame = -1
Query: 419 ASEAEKPANNCNDQSNRAPSSADGNCSSSSCKGESVDQNVIDTLRNLGQSMLEHIQVIES 240
AS+A K N+ + N+ ++ + + S G+S QN+ TL+NLGQSML+HI+ IE
Sbjct: 737 ASDATK-TNDVKIKKNQIGCYSESHPQALS-SGDS-SQNLRKTLKNLGQSMLKHIEAIEL 793
Query: 239 TFQQ-----GQGASMDIMSKNVVGGKGQVAAISALKELRKISNLLSEM 111
FQQ G ++ N++ KGQV A +ALKELRK+SNLLSEM
Sbjct: 794 VFQQEPCLVPAGLIGNLAKTNLI-EKGQVTATTALKELRKLSNLLSEM 840
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,346,944
Number of Sequences: 1393205
Number of extensions: 7028035
Number of successful extensions: 18141
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 17479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18104
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
