Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017910A_C01 KMC017910A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK61317.1|AF306501_1 NBS-LRR resistance-like protein J71 [Ph... 36 0.24
dbj|BAC55206.1| dTDP-glucose 4,6-dehydratase [Streptomyces sp. T... 34 1.2
gb|AAK83353.1|AF388363_1 zinc finger buttonhead-related transcri... 33 1.5
sp|P28349|NIT4_NEUCR NITROGEN ASSIMILATION TRANSCRIPTION FACTOR ... 33 2.0
gb|EAA33271.1| NITROGEN ASSIMILATION TRANSCRIPTION FACTOR NIT-4 ... 33 2.0
>gb|AAK61317.1|AF306501_1 NBS-LRR resistance-like protein J71 [Phaseolus vulgaris]
gi|14348631|gb|AAK61321.1|AF306505_1 NBS-LRR
resistance-like protein J71 [Phaseolus vulgaris]
Length = 1066
Score = 36.2 bits (82), Expect = 0.24
Identities = 13/31 (41%), Positives = 23/31 (73%)
Frame = -3
Query: 521 KESPMLTQKLLNPVGADWFKIAHIRNIKIHD 429
++ P+L ++ NP G DW KIAHI+ ++++D
Sbjct: 1035 RDCPLLKERCRNPDGEDWGKIAHIQKLEMND 1065
>dbj|BAC55206.1| dTDP-glucose 4,6-dehydratase [Streptomyces sp. TP-A0274]
Length = 334
Score = 33.9 bits (76), Expect = 1.2
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 506 LTQKLLNPVGADWFKIAHIRNIKIHDRVFSR*SAGASFVS-RNKIPSQTTL 357
LT +LLN + ADW + +R+ K HDR +S A + R++IP + L
Sbjct: 244 LTTRLLNALDADWRSVEKVRDRKAHDRRYSLTDARLRALGHRSRIPFEEGL 294
>gb|AAK83353.1|AF388363_1 zinc finger buttonhead-related transcription factor 1 [Danio rerio]
Length = 367
Score = 33.5 bits (75), Expect = 1.5
Identities = 16/52 (30%), Positives = 24/52 (45%)
Frame = +2
Query: 254 PKPQPPALPSQNPGSTAFSHRSLSHLLI*IGKELQVWSEMESYSLTQKRHQH 409
P P PPA+PS PG + H+ L G+++ WS + + H H
Sbjct: 150 PAPIPPAMPSFVPGHSGLVHQQQRQLSPNPGEDIPWWSLQQGNPVAHSVHPH 201
>sp|P28349|NIT4_NEUCR NITROGEN ASSIMILATION TRANSCRIPTION FACTOR NIT-4
gi|101873|pir||A41696 regulatory protein nit-4 -
Neurospora crassa gi|245224|gb|AAB21394.1| NIT4=protein
product involved in nitrate assimilation [Neurospora
intermedia, Peptide, 1090 aa]
Length = 1090
Score = 33.1 bits (74), Expect = 2.0
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +2
Query: 251 MPKPQPPALPSQNPGSTAFSHRSLSHLLI*IGKELQVWSEMESYSLTQKRHQHSILRKHG 430
+P P P +P Q A S S +++L LQ + Q H H ++
Sbjct: 745 LPDPSAPIIPQQQQNMQAISSLSQNNMLHQHHHHLQ-----NQHQPQQPHHNHMTYQQQQ 799
Query: 431 HGFLCYGYELS*TNLHLPDSRASESTWGI 517
H L + +S +++ + D+ A+ + WGI
Sbjct: 800 HNLLT--HPVSASSMSMSDTLATITAWGI 826
>gb|EAA33271.1| NITROGEN ASSIMILATION TRANSCRIPTION FACTOR NIT-4 [Neurospora
crassa]
Length = 1090
Score = 33.1 bits (74), Expect = 2.0
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +2
Query: 251 MPKPQPPALPSQNPGSTAFSHRSLSHLLI*IGKELQVWSEMESYSLTQKRHQHSILRKHG 430
+P P P +P Q A S S +++L LQ + Q H H ++
Sbjct: 745 LPDPSAPIIPQQQQNMQAISSLSQNNMLHQHHHHLQ-----NQHQPQQPHHNHMTYQQQQ 799
Query: 431 HGFLCYGYELS*TNLHLPDSRASESTWGI 517
H L + +S +++ + D+ A+ + WGI
Sbjct: 800 HNLLT--HPVSASSMSMSDTLATITAWGI 826
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,771,486
Number of Sequences: 1393205
Number of extensions: 10127444
Number of successful extensions: 32022
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 29623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31955
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
