Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017898A_C01 KMC017898A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL91217.1| unknown protein [Arabidopsis thaliana] gi|2837247... 110 2e-23
pir||T04938 hypothetical protein F7J7.10 - Arabidopsis thaliana ... 110 2e-23
ref|NP_193839.2| putative protein (fragment); protein id: At4g21... 110 2e-23
pir||D86171 hypothetical protein [imported] - Arabidopsis thalia... 94 2e-18
ref|NP_171898.1| unknown protein; protein id: At1g04020.1 [Arabi... 94 2e-18
>gb|AAL91217.1| unknown protein [Arabidopsis thaliana] gi|28372474|gb|AAO39850.1|
BRCA1 [Arabidopsis thaliana]
Length = 941
Score = 110 bits (275), Expect = 2e-23
Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Frame = -3
Query: 634 RVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIAAGGLVLHRKPVLA-DHPHQTLIIYS 458
R L K+PKLF G KFY MGDF +YKG+LQD+++AAGG +L R+PV + D+ T++++S
Sbjct: 836 RALKKKPKLFTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEASTIVVFS 895
Query: 457 LELPNKCNPSEKDTIFSRRRSDAEVLASSTGSKVASNTWILNSIAACKLQCL 302
+E PS+K T+ ++RRSDAE LA S ++ AS++W+L+SIA C++ L
Sbjct: 896 VE------PSKKKTL-TQRRSDAEALAKSARARAASSSWVLDSIAGCQILVL 940
>pir||T04938 hypothetical protein F7J7.10 - Arabidopsis thaliana (fragment)
gi|3377941|emb|CAA17526.1| putative protein (fragment)
[Arabidopsis thaliana]
Length = 1331
Score = 110 bits (275), Expect = 2e-23
Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Frame = -3
Query: 634 RVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIAAGGLVLHRKPVLA-DHPHQTLIIYS 458
R L K+PKLF G KFY MGDF +YKG+LQD+++AAGG +L R+PV + D+ T++++S
Sbjct: 1226 RALKKKPKLFTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEASTIVVFS 1285
Query: 457 LELPNKCNPSEKDTIFSRRRSDAEVLASSTGSKVASNTWILNSIAACKLQCL 302
+E PS+K T+ ++RRSDAE LA S ++ AS++W+L+SIA C++ L
Sbjct: 1286 VE------PSKKKTL-TQRRSDAEALAKSARARAASSSWVLDSIAGCQILVL 1330
>ref|NP_193839.2| putative protein (fragment); protein id: At4g21070.1 [Arabidopsis
thaliana]
Length = 1523
Score = 110 bits (275), Expect = 2e-23
Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Frame = -3
Query: 634 RVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIAAGGLVLHRKPVLA-DHPHQTLIIYS 458
R L K+PKLF G KFY MGDF +YKG+LQD+++AAGG +L R+PV + D+ T++++S
Sbjct: 1418 RALKKKPKLFTGLKFYIMGDFELAYKGYLQDLIVAAGGTILRRRPVSSDDNEASTIVVFS 1477
Query: 457 LELPNKCNPSEKDTIFSRRRSDAEVLASSTGSKVASNTWILNSIAACKLQCL 302
+E PS+K T+ ++RRSDAE LA S ++ AS++W+L+SIA C++ L
Sbjct: 1478 VE------PSKKKTL-TQRRSDAEALAKSARARAASSSWVLDSIAGCQILVL 1522
>pir||D86171 hypothetical protein [imported] - Arabidopsis thaliana
gi|4204288|gb|AAD10669.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 727
Score = 93.6 bits (231), Expect = 2e-18
Identities = 48/116 (41%), Positives = 70/116 (59%), Gaps = 8/116 (6%)
Frame = -3
Query: 634 RVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIAAGGLVLHRKPVLA--------DHPH 479
R +PKLF+G KFYF GDF YK LQ++V AGG +L+ + L D
Sbjct: 607 RAETNKPKLFEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRS 666
Query: 478 QTLIIYSLELPNKCNPSEKDTIFSRRRSDAEVLASSTGSKVASNTWILNSIAACKL 311
++++Y+++ P+ C E+ TI +R +DAE LAS TGS++ +TW+L SIA KL
Sbjct: 667 SSIVVYNIDPPHGCALGEEVTIIWQRANDAEALASQTGSRLVGHTWVLESIAGYKL 722
>ref|NP_171898.1| unknown protein; protein id: At1g04020.1 [Arabidopsis thaliana]
Length = 665
Score = 93.6 bits (231), Expect = 2e-18
Identities = 48/116 (41%), Positives = 70/116 (59%), Gaps = 8/116 (6%)
Frame = -3
Query: 634 RVLNKQPKLFDGYKFYFMGDFMPSYKGFLQDIVIAAGGLVLHRKPVLA--------DHPH 479
R +PKLF+G KFYF GDF YK LQ++V AGG +L+ + L D
Sbjct: 545 RAETNKPKLFEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNTEDELGAESSNNVNDQRS 604
Query: 478 QTLIIYSLELPNKCNPSEKDTIFSRRRSDAEVLASSTGSKVASNTWILNSIAACKL 311
++++Y+++ P+ C E+ TI +R +DAE LAS TGS++ +TW+L SIA KL
Sbjct: 605 SSIVVYNIDPPHGCALGEEVTIIWQRANDAEALASQTGSRLVGHTWVLESIAGYKL 660
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,013,630
Number of Sequences: 1393205
Number of extensions: 10207570
Number of successful extensions: 23586
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23562
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
