Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017829A_C01 KMC017829A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC57637.1| P0020E09.16 [Oryza sativa (japonica cultivar-gro... 108 8e-23
ref|NP_200649.1| unknown protein; protein id: At5g58410.1 [Arabi... 89 4e-17
sp|O94822|Z294_HUMAN Zinc finger protein 294 88 1e-16
ref|XP_047829.2| similar to Zinc finger protein 294 [Homo sapiens] 88 1e-16
emb|CAB90429.3| containing human KIAA0714 protein [Homo sapiens] 88 1e-16
>dbj|BAC57637.1| P0020E09.16 [Oryza sativa (japonica cultivar-group)]
Length = 1947
Score = 108 bits (269), Expect = 8e-23
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = -2
Query: 645 EECPICXSVIHTTNHSLPRLACRTCKHXFHSACLYKWFSTSHKSSCPLCQSPF 487
EECPIC S++HT+NHSLPRLAC+TC+H FH ACLYKWFSTS+KS+CPLCQ+PF
Sbjct: 1895 EECPICYSILHTSNHSLPRLACKTCRHKFHGACLYKWFSTSNKSTCPLCQTPF 1947
>ref|NP_200649.1| unknown protein; protein id: At5g58410.1 [Arabidopsis thaliana]
Length = 1873
Score = 89.4 bits (220), Expect = 4e-17
Identities = 38/52 (73%), Positives = 41/52 (78%)
Frame = -2
Query: 645 EECPICXSVIHTTNHSLPRLACRTCKHXFHSACLYKWFSTSHKSSCPLCQSP 490
E+CPIC SVIH NHSLPR AC TCK+ FH ACL KWF TS+K CPLCQSP
Sbjct: 1821 EDCPICYSVIHIGNHSLPRRACVTCKYKFHKACLDKWFYTSNKKLCPLCQSP 1872
>sp|O94822|Z294_HUMAN Zinc finger protein 294
Length = 1812
Score = 87.8 bits (216), Expect = 1e-16
Identities = 36/53 (67%), Positives = 44/53 (82%)
Frame = -2
Query: 645 EECPICXSVIHTTNHSLPRLACRTCKHXFHSACLYKWFSTSHKSSCPLCQSPF 487
E+C IC SVIH N+SLP+ ACRTCK FHSACLYKWF++S+KS+CPLC+ F
Sbjct: 1759 EDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1811
>ref|XP_047829.2| similar to Zinc finger protein 294 [Homo sapiens]
Length = 1812
Score = 87.8 bits (216), Expect = 1e-16
Identities = 36/53 (67%), Positives = 44/53 (82%)
Frame = -2
Query: 645 EECPICXSVIHTTNHSLPRLACRTCKHXFHSACLYKWFSTSHKSSCPLCQSPF 487
E+C IC SVIH N+SLP+ ACRTCK FHSACLYKWF++S+KS+CPLC+ F
Sbjct: 1759 EDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1811
>emb|CAB90429.3| containing human KIAA0714 protein [Homo sapiens]
Length = 1574
Score = 87.8 bits (216), Expect = 1e-16
Identities = 36/53 (67%), Positives = 44/53 (82%)
Frame = -2
Query: 645 EECPICXSVIHTTNHSLPRLACRTCKHXFHSACLYKWFSTSHKSSCPLCQSPF 487
E+C IC SVIH N+SLP+ ACRTCK FHSACLYKWF++S+KS+CPLC+ F
Sbjct: 1521 EDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1573
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,248,837
Number of Sequences: 1393205
Number of extensions: 9792826
Number of successful extensions: 23231
Number of sequences better than 10.0: 775
Number of HSP's better than 10.0 without gapping: 22337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23165
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
