Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017815A_C01 KMC017815A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica ... 336 1e-91
ref|NP_173226.2| ABC transporter family protein; protein id: At1... 333 1e-90
pir||E86313 hypothetical protein F2H15.7 - Arabidopsis thaliana ... 333 1e-90
ref|NP_188746.2| ABC transporter family protein; protein id: At3... 229 2e-59
gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|2319839... 229 2e-59
>gb|AAM92819.1| putative ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 723
Score = 336 bits (862), Expect = 1e-91
Identities = 157/173 (90%), Positives = 170/173 (97%)
Frame = -3
Query: 546 NSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPF 367
+SILARG+CASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFV+SNT+SA PF
Sbjct: 449 SSILARGACASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVLAFVISNTISAMPF 508
Query: 366 LVLITFLSGTICYFMVRLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG 187
L+LITF+SGT+CYFMVRLHPGF+HY+FFVLCLYASVTVVESLMMAIAS++PNFLMGIIIG
Sbjct: 509 LILITFISGTMCYFMVRLHPGFTHYLFFVLCLYASVTVVESLMMAIASVIPNFLMGIIIG 568
Query: 186 AGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFD 28
AGIQGIFMLVSGYFRLPHDIPKP WRYPMSYISFH+WALQGQYQNDL+GLVFD
Sbjct: 569 AGIQGIFMLVSGYFRLPHDIPKPFWRYPMSYISFHYWALQGQYQNDLKGLVFD 621
>ref|NP_173226.2| ABC transporter family protein; protein id: At1g17840.1
[Arabidopsis thaliana] gi|19423992|gb|AAL87274.1|
putative ABC transporter protein [Arabidopsis thaliana]
gi|23297574|gb|AAN12898.1| putative ABC transporter
protein [Arabidopsis thaliana]
Length = 703
Score = 333 bits (853), Expect = 1e-90
Identities = 158/180 (87%), Positives = 172/180 (94%)
Frame = -3
Query: 546 NSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPF 367
++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFV++NT+SATPF
Sbjct: 428 SAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPF 487
Query: 366 LVLITFLSGTICYFMVRLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG 187
L++ITF+SGTICYFMV LHPGF+HY+FFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG
Sbjct: 488 LIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG 547
Query: 186 AGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFDIRHRIFQ 7
AGIQGIFMLVSG+FRLP+DIPKP WRYPMSYISFHFWALQGQYQNDLRGL FD + F+
Sbjct: 548 AGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFK 607
>pir||E86313 hypothetical protein F2H15.7 - Arabidopsis thaliana
gi|9665062|gb|AAF97264.1|AC034106_7 Contains similarity
to ATP dependent transmembrane transporter protein (wh3)
from Bombyx mori gb|AF229609 and contains an ABC
transporter PF|00005 domain. ESTs gb|Z18062,
gb|AI999375, gb|N96732, gb|F14058, gb|AV528782,
gb|AV559526, gb|AV556190, gb|AV562800, gb|AV559560,
gb|AV523165, gb|AV565094, gb|AV566285 come from this
gene. [Arabidopsis thaliana]
Length = 659
Score = 333 bits (853), Expect = 1e-90
Identities = 158/180 (87%), Positives = 172/180 (94%)
Frame = -3
Query: 546 NSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPF 367
++ILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGV AFV++NT+SATPF
Sbjct: 384 SAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPF 443
Query: 366 LVLITFLSGTICYFMVRLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG 187
L++ITF+SGTICYFMV LHPGF+HY+FFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG
Sbjct: 444 LIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIG 503
Query: 186 AGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFDIRHRIFQ 7
AGIQGIFMLVSG+FRLP+DIPKP WRYPMSYISFHFWALQGQYQNDLRGL FD + F+
Sbjct: 504 AGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFK 563
>ref|NP_188746.2| ABC transporter family protein; protein id: At3g21090.1, supported
by cDNA: gi_20260309 [Arabidopsis thaliana]
Length = 691
Score = 229 bits (583), Expect = 2e-59
Identities = 105/172 (61%), Positives = 139/172 (80%)
Frame = -3
Query: 543 SILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPFL 364
SILAR SC F+ GF+TFMSIGGFPSF+E+MKVF +ERL+G+YGV+ +++SN +S+ PFL
Sbjct: 407 SILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFL 466
Query: 363 VLITFLSGTICYFMVRLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGA 184
V I+ ++GTI Y +V+ PGFSHY FF L ++ SV+V+ESLMM +AS+VPNFLMG+I GA
Sbjct: 467 VAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGA 526
Query: 183 GIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFD 28
G+ GI M+ SG+FRL D+PK WRYP+SYIS+ WA+QG Y+ND GL F+
Sbjct: 527 GLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFE 578
>gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|23198394|gb|AAN15724.1|
unknown protein [Arabidopsis thaliana]
Length = 691
Score = 229 bits (583), Expect = 2e-59
Identities = 105/172 (61%), Positives = 139/172 (80%)
Frame = -3
Query: 543 SILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVVSNTVSATPFL 364
SILAR SC F+ GF+TFMSIGGFPSF+E+MKVF +ERL+G+YGV+ +++SN +S+ PFL
Sbjct: 407 SILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFL 466
Query: 363 VLITFLSGTICYFMVRLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGA 184
V I+ ++GTI Y +V+ PGFSHY FF L ++ SV+V+ESLMM +AS+VPNFLMG+I GA
Sbjct: 467 VAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGA 526
Query: 183 GIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLVFD 28
G+ GI M+ SG+FRL D+PK WRYP+SYIS+ WA+QG Y+ND GL F+
Sbjct: 527 GLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFE 578
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,527,269
Number of Sequences: 1393205
Number of extensions: 11765340
Number of successful extensions: 30905
Number of sequences better than 10.0: 271
Number of HSP's better than 10.0 without gapping: 29754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30842
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
