Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017765A_C01 KMC017765A_c01
(683 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO34666.1| HASTY [Arabidopsis thaliana] 98 1e-19
dbj|BAB40009.1| P0503E05.11 [Oryza sativa (japonica cultivar-gro... 93 3e-18
ref|NP_187155.1| unknown protein; protein id: At3g05040.1 [Arabi... 92 7e-18
ref|NP_048304.1| ORF MSV234 hypthetical protein [Melanoplus sang... 33 4.8
pir||S56645 chaperonin 60 alpha chain precursor, chloroplast - C... 32 6.2
>gb|AAO34666.1| HASTY [Arabidopsis thaliana]
Length = 1202
Score = 97.8 bits (242), Expect = 1e-19
Identities = 49/72 (68%), Positives = 59/72 (81%)
Frame = -1
Query: 683 LLSLPSITPHDLHAFEESLTKTASPKEQKQLMKSLLQLATGNKLKALAAQKTVNIITNVS 504
LLSLP +TP+DLHAFEE+ KT+SPKEQKQLM+SLL L TGN LKALAAQK+ N+ITNV+
Sbjct: 1118 LLSLPCLTPNDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVT 1177
Query: 503 MRPRSSVNASES 468
R R +A E+
Sbjct: 1178 ARTRLPASAPET 1189
>dbj|BAB40009.1| P0503E05.11 [Oryza sativa (japonica cultivar-group)]
Length = 558
Score = 93.2 bits (230), Expect = 3e-18
Identities = 49/85 (57%), Positives = 62/85 (72%)
Frame = -1
Query: 683 LLSLPSITPHDLHAFEESLTKTASPKEQKQLMKSLLQLATGNKLKALAAQKTVNIITNVS 504
LLSLP + DL AF+ESL+KTASPK+QK LM+SLL LA+GNKL+AL QK N+ITNV+
Sbjct: 472 LLSLPHMKQEDLLAFDESLSKTASPKDQKLLMRSLLLLASGNKLRALVGQKATNVITNVT 531
Query: 503 MRPRSSVNASESKVDDGDVVGLAAI 429
R RSS ++ D +GLAA+
Sbjct: 532 TRNRSSAARHGLSAEEDDHIGLAAL 556
>ref|NP_187155.1| unknown protein; protein id: At3g05040.1 [Arabidopsis thaliana]
gi|12322839|gb|AAG51401.1|AC009465_1 unknown protein;
244-3351 [Arabidopsis thaliana]
Length = 522
Score = 92.0 bits (227), Expect = 7e-18
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = -1
Query: 683 LLSLPSITPHDLHAFEESLTKTASPKEQKQLMKSLLQLATGNKLKALAAQKTVNIITNVS 504
LLSLP +TP+DLHAFEE+ KT+SPKEQKQLM+SLL L TGN LKALAAQK+ N+ITNV+
Sbjct: 448 LLSLPCLTPNDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVT 507
>ref|NP_048304.1| ORF MSV234 hypthetical protein [Melanoplus sanguinipes
entomopoxvirus] gi|11361205|pir||T28394 hypothetical
protein MSV234 [imported] - Melanoplus sanguinipes
entomopoxvirus gi|4049784|gb|AAC97744.1| ORF MSV234
hypthetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 117
Score = 32.7 bits (73), Expect = 4.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 286 FHVLALFSLHRHHVNEIYHYAY*NASTHSFFGNHIIHFPILFTWNIFS 143
FH+ + F H HH + +H+ HS+F H HF + F + S
Sbjct: 62 FHLHSYFHFHHHHFHVYFHF-------HSYFHFHHHHFHVYFDLYLLS 102
>pir||S56645 chaperonin 60 alpha chain precursor, chloroplast - Chlamydomonas
reinhardtii
Length = 580
Score = 32.3 bits (72), Expect = 6.2
Identities = 25/107 (23%), Positives = 54/107 (50%)
Frame = -1
Query: 638 EESLTKTASPKEQKQLMKSLLQLATGNKLKALAAQKTVNIITNVSMRPRSSVNASESKVD 459
++ L +T S + ++L + + +L+ G + + A + + +R + NA+ + V+
Sbjct: 383 KKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAEL-EDRKLRIEDAKNATFAAVE 441
Query: 458 DGDVVGLAAII*YYSELMEGFCTGVSSY*EELGSYYLLTYRFFPCNL 318
+G V G A + + SEL+ F ++ E+LG+ ++ PC L
Sbjct: 442 EGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRL 488
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,608,485
Number of Sequences: 1393205
Number of extensions: 12030821
Number of successful extensions: 26965
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26945
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
