Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017737A_C01 KMC017737A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566528.1| expressed protein; protein id: At3g15840.1, sup... 114 2e-26
gb|AAG40376.1|AF325024_1 AT3g15840 [Arabidopsis thaliana] 114 3e-26
gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana] 38 0.070
gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana] 38 0.070
ref|NP_565913.1| auxin-regulated protein; protein id: At2g39730.... 38 0.070
>ref|NP_566528.1| expressed protein; protein id: At3g15840.1, supported by cDNA:
gi_13358213, supported by cDNA: gi_14334703 [Arabidopsis
thaliana] gi|11994356|dbj|BAB02315.1|
gene_id:MSJ11.24~unknown protein [Arabidopsis thaliana]
gi|14334704|gb|AAK59530.1| unknown protein [Arabidopsis
thaliana] gi|22136938|gb|AAM91813.1| unknown protein
[Arabidopsis thaliana]
Length = 268
Score = 114 bits (285), Expect(2) = 2e-26
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = -1
Query: 502 FFNEGLAEGLGQEGACEPAIFPDSNKVITQCAMLGHLTVEGGDRCDLNLVEGCTDPSSHL 323
FFNEGLA L Q+GACE AIFPDSN V T+C M+ +LTVEGGDRC+L+LV GC D +S
Sbjct: 188 FFNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNLDLVPGCMDTNSEH 247
Query: 322 YNPLAHVDDGTCPLDLDSDSE 260
+NP A+VDDG+CPL+L E
Sbjct: 248 FNPYANVDDGSCPLELSDSDE 268
Score = 26.2 bits (56), Expect(2) = 2e-26
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 543 QFQVPKVLQNKPID 502
QFQVPK QNKPI+
Sbjct: 174 QFQVPKRWQNKPIE 187
>gb|AAG40376.1|AF325024_1 AT3g15840 [Arabidopsis thaliana]
Length = 268
Score = 114 bits (284), Expect(2) = 3e-26
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = -1
Query: 502 FFNEGLAEGLGQEGACEPAIFPDSNKVITQCAMLGHLTVEGGDRCDLNLVEGCTDPSSHL 323
FFNEGLA L Q+GACE AIFPDSN V T+C M+ +LTVEGGDRC+L+LV GC D +S
Sbjct: 188 FFNEGLANELSQDGACERAIFPDSNVVPTRCKMIANLTVEGGDRCNLDLVPGCMDTNSEH 247
Query: 322 YNPLAHVDDGTCPLDLDSDSE 260
+NP A+VDDG+CPL+L E
Sbjct: 248 FNPYANVDDGSCPLELSDSDE 268
Score = 26.2 bits (56), Expect(2) = 3e-26
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 543 QFQVPKVLQNKPID 502
QFQVPK QNKPI+
Sbjct: 174 QFQVPKRRQNKPIE 187
>gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 38.1 bits (87), Expect = 0.070
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 385 EGGDRCDLNLVEGCTDPSSHLYNPLAHVDDGTC 287
+G + +L + EGCTDP + ++P A DDGTC
Sbjct: 438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTC 470
>gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 38.1 bits (87), Expect = 0.070
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 385 EGGDRCDLNLVEGCTDPSSHLYNPLAHVDDGTC 287
+G + +L + EGCTDP + ++P A DDGTC
Sbjct: 438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTC 470
>ref|NP_565913.1| auxin-regulated protein; protein id: At2g39730.1, supported by
cDNA: 7114., supported by cDNA: gi_13358237, supported
by cDNA: gi_15450378, supported by cDNA: gi_15810187
[Arabidopsis thaliana] gi|12643259|sp|P10896|RCA_ARATH
Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplast precursor (RuBisCO activase) (RA)
gi|7438143|pir||T01002 ribulose-bisphosphate carboxylase
activase (EC 6.3.4.-) At2g39730, splice form 1 -
Arabidopsis thaliana gi|166834|gb|AAA20202.1| ribulose
bisphosphate carboxylase/oxygenase activase
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis
thaliana] gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730
[Arabidopsis thaliana] gi|15810188|gb|AAL06995.1|
At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis
thaliana]
Length = 474
Score = 38.1 bits (87), Expect = 0.070
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 385 EGGDRCDLNLVEGCTDPSSHLYNPLAHVDDGTC 287
+G + +L + EGCTDP + ++P A DDGTC
Sbjct: 438 KGAQQVNLPVPEGCTDPVAENFDPTARSDDGTC 470
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,486,183
Number of Sequences: 1393205
Number of extensions: 11572632
Number of successful extensions: 23532
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23517
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
