Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017720A_C01 KMC017720A_c01
(381 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NTX9|CTH7_HUMAN Protein C20orf177 gi|7981307|emb|CAB92095.1... 32 2.0
pir||T46282 hypothetical protein DKFZp566C114.1 - human (fragmen... 32 2.0
gb|AAK56401.1| frizzled-2 [Danio rerio] 30 9.7
>sp|Q9NTX9|CTH7_HUMAN Protein C20orf177 gi|7981307|emb|CAB92095.1| dJ551D2.5.2 (Novel
protein, variant 2) [Homo sapiens]
Length = 383
Score = 32.0 bits (71), Expect = 2.0
Identities = 22/71 (30%), Positives = 31/71 (42%)
Frame = +2
Query: 128 KYLNTKYQKMGYLIYTTQCHAAPGGKSCTKIAMGRDLVVTSVGSYNKIYSSIIIHFPFPE 307
KY++ Q + T QC A GGK+ A G + S G I S++ P E
Sbjct: 180 KYIDRLIQLEWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQE 239
Query: 308 IKLQSLPSKHK 340
+S PS+ K
Sbjct: 240 GASKSGPSRKK 250
>pir||T46282 hypothetical protein DKFZp566C114.1 - human (fragment)
gi|6808013|emb|CAB70739.1| hypothetical protein [Homo
sapiens]
Length = 316
Score = 32.0 bits (71), Expect = 2.0
Identities = 22/71 (30%), Positives = 31/71 (42%)
Frame = +2
Query: 128 KYLNTKYQKMGYLIYTTQCHAAPGGKSCTKIAMGRDLVVTSVGSYNKIYSSIIIHFPFPE 307
KY++ Q + T QC A GGK+ A G + S G I S++ P E
Sbjct: 113 KYIDRLIQLEWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQE 172
Query: 308 IKLQSLPSKHK 340
+S PS+ K
Sbjct: 173 GASKSGPSRKK 183
>gb|AAK56401.1| frizzled-2 [Danio rerio]
Length = 550
Score = 29.6 bits (65), Expect = 9.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 209 CTKIAMGRDLVVTSVGSYNKIYSSIIIHFPFPEIKLQSLP 328
CT IA + ++ VG YN+ + + +H +P +K+Q P
Sbjct: 47 CTDIAYNQTIMPNLVGHYNQEDAGLEVHQFYPLVKVQCSP 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 334,321,398
Number of Sequences: 1393205
Number of extensions: 6989110
Number of successful extensions: 13354
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13352
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
