Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017694A_C01 KMC017694A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187752.1| putative cell division related protein; protein... 113 1e-24
ref|NP_196229.1| cell division related protein-like; protein id:... 107 8e-23
dbj|BAC65017.1| P0498E12.13 [Oryza sativa (japonica cultivar-gro... 75 7e-13
dbj|BAB09170.1| gene_id:MFC19.9~unknown protein [Arabidopsis tha... 73 3e-12
ref|NP_568645.1| expressed protein; protein id: At5g45420.1, sup... 73 3e-12
>ref|NP_187752.1| putative cell division related protein; protein id: At3g11450.1
[Arabidopsis thaliana]
gi|12322899|gb|AAG51437.1|AC008153_10 putative cell
division related protein; 50012-47994 [Arabidopsis
thaliana]
Length = 663
Score = 113 bits (283), Expect = 1e-24
Identities = 63/109 (57%), Positives = 72/109 (65%), Gaps = 2/109 (1%)
Frame = -3
Query: 547 TNPETGK--PENSDASSKKDNLEDSQGKSTDDQNSTAVAANGVSSSSSDQDIWSAVQERA 374
T E G+ P + ++ K + E GKS+ Q+S NG SSD D WS VQERA
Sbjct: 558 TREELGESLPTMTTTTNAKPSKETVVGKSSSSQSSDN---NGEVGGSSDADSWSTVQERA 614
Query: 373 LVQALKAFPKEASQRWERVAAAVPGKTVNQCKKKFTAMKESFRNKKGAV 227
LVQALK FPKE SQRWERVAAAVPGKT+NQCKKKF +KE RNKK V
Sbjct: 615 LVQALKTFPKETSQRWERVAAAVPGKTMNQCKKKFAELKEIIRNKKTGV 663
Score = 32.7 bits (73), Expect = 3.2
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -3
Query: 508 SSKKDNLEDSQ--GKSTDDQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPKEAS 335
SS+ D E + K T+ + + SS+ + WS + L + + +PK S
Sbjct: 443 SSRNDEAESKEKVSKKTNGGTEPTTRVSQLDSSTQKKQPWSKEEIDMLRKGMIKYPKGTS 502
Query: 334 QRWERVAAAV-PGKTVNQCKK 275
+RWE ++ + G++V + K
Sbjct: 503 RRWEVISEYIGTGRSVEEILK 523
>ref|NP_196229.1| cell division related protein-like; protein id: At5g06110.1
[Arabidopsis thaliana] gi|8978347|dbj|BAA98200.1| cell
division related protein-like [Arabidopsis thaliana]
Length = 663
Score = 107 bits (268), Expect = 8e-23
Identities = 57/109 (52%), Positives = 71/109 (64%), Gaps = 5/109 (4%)
Frame = -3
Query: 547 TNPETGKP-----ENSDASSKKDNLEDSQGKSTDDQNSTAVAANGVSSSSSDQDIWSAVQ 383
T E G+P + D +S K + GK+ ++ NS + ++S SD D WSAVQ
Sbjct: 553 TREELGEPIIPTKAHEDNNSTKTETAEQNGKTKENNNSNG-NSEPAAASGSDPDGWSAVQ 611
Query: 382 ERALVQALKAFPKEASQRWERVAAAVPGKTVNQCKKKFTAMKESFRNKK 236
ERALVQALK FPKE +QRWERVA AVPGKT+NQCKKKF +K+ R KK
Sbjct: 612 ERALVQALKTFPKETNQRWERVATAVPGKTMNQCKKKFADLKDVIRTKK 660
>dbj|BAC65017.1| P0498E12.13 [Oryza sativa (japonica cultivar-group)]
Length = 325
Score = 74.7 bits (182), Expect = 7e-13
Identities = 38/85 (44%), Positives = 50/85 (58%)
Frame = -3
Query: 484 DSQGKSTDDQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPKEASQRWERVAAAV 305
D + ++TD + A G S S WSA +RAL+ ALK FPK+ + RWE+VA AV
Sbjct: 240 DPRSEATDAGSGNAGGGGGESGDGS----WSAGDDRALLNALKEFPKDTAMRWEKVAVAV 295
Query: 304 PGKTVNQCKKKFTAMKESFRNKKGA 230
PGKT C K+ T +K FR+ K A
Sbjct: 296 PGKTKAACMKRVTELKRDFRSSKAA 320
>dbj|BAB09170.1| gene_id:MFC19.9~unknown protein [Arabidopsis thaliana]
Length = 352
Score = 72.8 bits (177), Expect = 3e-12
Identities = 35/75 (46%), Positives = 50/75 (66%)
Frame = -3
Query: 460 DQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPKEASQRWERVAAAVPGKTVNQC 281
D+N A G + ++IWS ++ AL+ ALKAFPKEA+ RWE++AAAVPGK+ C
Sbjct: 276 DENEENSGAGG--DAEGTKEIWSNGEDIALLNALKAFPKEAAMRWEKIAAAVPGKSKAAC 333
Query: 280 KKKFTAMKESFRNKK 236
K+ T +K+ FR+ K
Sbjct: 334 MKRVTELKKGFRSSK 348
Score = 37.0 bits (84), Expect = 0.17
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -3
Query: 523 ENSDASSKKDNLEDSQGKSTDDQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPK 344
+ S S+K DN ++ T+ + + S S ++ W+A + L + L P
Sbjct: 161 KRSKGSTKSDNPPENASAVTEVSRKVVIPQSKESGSVNETKDWTAEEIEILKKQLIKHPA 220
Query: 343 EASQRWERVAAAVPG--KTVNQCKK 275
RWE VA+A G KT N KK
Sbjct: 221 GKPGRWETVASAFGGRYKTENVIKK 245
>ref|NP_568645.1| expressed protein; protein id: At5g45420.1, supported by cDNA:
gi_13605892 [Arabidopsis thaliana]
gi|13605893|gb|AAK32932.1|AF367345_1 AT5g45420/MFC19_9
[Arabidopsis thaliana] gi|18491137|gb|AAL69537.1|
AT5g45420/MFC19_9 [Arabidopsis thaliana]
gi|26450023|dbj|BAC42132.1| unknown protein [Arabidopsis
thaliana]
Length = 309
Score = 72.8 bits (177), Expect = 3e-12
Identities = 35/75 (46%), Positives = 50/75 (66%)
Frame = -3
Query: 460 DQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPKEASQRWERVAAAVPGKTVNQC 281
D+N A G + ++IWS ++ AL+ ALKAFPKEA+ RWE++AAAVPGK+ C
Sbjct: 233 DENEENSGAGG--DAEGTKEIWSNGEDIALLNALKAFPKEAAMRWEKIAAAVPGKSKAAC 290
Query: 280 KKKFTAMKESFRNKK 236
K+ T +K+ FR+ K
Sbjct: 291 MKRVTELKKGFRSSK 305
Score = 37.0 bits (84), Expect = 0.17
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -3
Query: 523 ENSDASSKKDNLEDSQGKSTDDQNSTAVAANGVSSSSSDQDIWSAVQERALVQALKAFPK 344
+ S S+K DN ++ T+ + + S S ++ W+A + L + L P
Sbjct: 118 KRSKGSTKSDNPPENASAVTEVSRKVVIPQSKESGSVNETKDWTAEEIEILKKQLIKHPA 177
Query: 343 EASQRWERVAAAVPG--KTVNQCKK 275
RWE VA+A G KT N KK
Sbjct: 178 GKPGRWETVASAFGGRYKTENVIKK 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,776,147
Number of Sequences: 1393205
Number of extensions: 9023584
Number of successful extensions: 29016
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 27014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28776
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
