Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017687A_C01 KMC017687A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176040.1| 20S proteasome beta subunit G1 (PBG1); protein ... 176 2e-43
pir||T51986 C 3.4.25.1 proteasome endopeptidase complex () chain... 176 2e-43
emb|CAA74030.1| multicatalytic endopeptidase complex, proteasome... 176 2e-43
dbj|BAA96839.1| beta 7 subunit of 20S proteasome [Oryza sativa (... 156 2e-37
gb|AAH08241.1| Similar to proteasome (prosome, macropain) subuni... 73 3e-12
>ref|NP_176040.1| 20S proteasome beta subunit G1 (PBG1); protein id: At1g56450.1,
supported by cDNA: gi_14190404, supported by cDNA:
gi_15010589, supported by cDNA: gi_15450550, supported
by cDNA: gi_3421122 [Arabidopsis thaliana]
gi|25290070|pir||D96606 20S proteasome beta subunit
(PBG1) [imported] - Arabidopsis thaliana
gi|12323023|gb|AAG51500.1|AC058785_3 20S proteasome beta
subunit (PBG1) [Arabidopsis thaliana]
gi|14190405|gb|AAK55683.1|AF378880_1 At1g56450/F13N6_3
[Arabidopsis thaliana] gi|15010590|gb|AAK73954.1|
At1g56450/F13N6_3 [Arabidopsis thaliana]
gi|15450551|gb|AAK96453.1| At1g56450/F13N6_3
[Arabidopsis thaliana]
Length = 246
Score = 176 bits (445), Expect = 2e-43
Identities = 80/100 (80%), Positives = 91/100 (91%)
Frame = -3
Query: 565 MVSMIGVNFEDXHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVN 386
MVSMIGV+FED H+ATG GNHLARPILRDEWH +L+FE+GVKLLEKCMRVLLYRDRSA+N
Sbjct: 147 MVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAIN 206
Query: 385 KIQIAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 266
K+QIAK+TEEG T+ P+SLKTYWEFS+F NPT GA GSW
Sbjct: 207 KLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246
>pir||T51986 C 3.4.25.1 proteasome endopeptidase complex () chain PBG1
[imported] - Arabidopsis thaliana
gi|3421123|gb|AAC32074.1| 20S proteasome beta subunit
PBG1 [Arabidopsis thaliana]
Length = 246
Score = 176 bits (445), Expect = 2e-43
Identities = 80/100 (80%), Positives = 91/100 (91%)
Frame = -3
Query: 565 MVSMIGVNFEDXHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVN 386
MVSMIGV+FED H+ATG GNHLARPILRDEWH +L+FE+GVKLLEKCMRVLLYRDRSA+N
Sbjct: 147 MVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAIN 206
Query: 385 KIQIAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 266
K+QIAK+TEEG T+ P+SLKTYWEFS+F NPT GA GSW
Sbjct: 207 KLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246
>emb|CAA74030.1| multicatalytic endopeptidase complex, proteasome component, beta
subunit [Arabidopsis thaliana]
Length = 121
Score = 176 bits (445), Expect = 2e-43
Identities = 80/100 (80%), Positives = 91/100 (91%)
Frame = -3
Query: 565 MVSMIGVNFEDXHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVN 386
MVSMIGV+FED H+ATG GNHLARPILRDEWH +L+FE+GVKLLEKCMRVLLYRDRSA+N
Sbjct: 22 MVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAIN 81
Query: 385 KIQIAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 266
K+QIAK+TEEG T+ P+SLKTYWEFS+F NPT GA GSW
Sbjct: 82 KLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 121
>dbj|BAA96839.1| beta 7 subunit of 20S proteasome [Oryza sativa (japonica
cultivar-group)]
Length = 256
Score = 156 bits (394), Expect = 2e-37
Identities = 70/100 (70%), Positives = 85/100 (85%)
Frame = -3
Query: 565 MVSMIGVNFEDXHIATGLGNHLARPILRDEWHENLTFEEGVKLLEKCMRVLLYRDRSAVN 386
MV+MIG +FE+ HIATG GNH+A PILR EW E++TFEE VKL+EKC+ VLLYRDRS++N
Sbjct: 157 MVNMIGTHFEENHIATGFGNHMAIPILRTEWREDMTFEEAVKLVEKCLLVLLYRDRSSIN 216
Query: 385 KIQIAKMTEEGATMFPPFSLKTYWEFSAFRNPTLGAEGSW 266
K QIAK+T EGAT++PP+SLKTYW F+AF NP GA GSW
Sbjct: 217 KFQIAKITTEGATIYPPYSLKTYWGFAAFENPAQGAVGSW 256
>gb|AAH08241.1| Similar to proteasome (prosome, macropain) subunit, beta type, 4
[Mus musculus]
Length = 264
Score = 72.8 bits (177), Expect = 3e-12
Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Frame = -3
Query: 562 VSMIGVNFEDXHIATGLGNHLARPILRD--EWHENLTFEEGVKLLEKCMRVLLYRDRSAV 389
V M+GV +E +ATG G +LA+P+LR+ E L+ E +L+E+CMRVL YRD +
Sbjct: 170 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSY 229
Query: 388 NKIQIAKMTEEGATMFPPFSLKTYWEFS 305
N+ QIA +TE+G + P S +T W+ +
Sbjct: 230 NRFQIATVTEKGVEIEGPLSAQTNWDIA 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,830,830
Number of Sequences: 1393205
Number of extensions: 9210350
Number of successful extensions: 22334
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 21905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22312
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
