Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017685A_C01 KMC017685A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_609877.2| CG12750-PA [Drosophila melanogaster] gi|2294674... 45 6e-04
gb|AAL29144.1| SD04745p [Drosophila melanogaster] 45 6e-04
ref|NP_200403.1| nucleolar protein-like; protein id: At5g55915.1... 43 0.002
ref|XP_207798.1| similar to ORF 1~putative [Rattus norvegicus] [... 43 0.002
gb|AAM67083.1| unknown [Arabidopsis thaliana] 42 0.003
>ref|NP_609877.2| CG12750-PA [Drosophila melanogaster] gi|22946749|gb|AAF53667.3|
CG12750-PA [Drosophila melanogaster]
Length = 1330
Score = 44.7 bits (104), Expect = 6e-04
Identities = 28/88 (31%), Positives = 46/88 (51%)
Frame = -3
Query: 506 EEDKPSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSK 327
EED S+ E+ S SE K K KRK K + KA + S + ++K++KK+ K
Sbjct: 959 EEDSSSDSSSESSSSDSSSEPKKKRKRKDKDKKKSK-KATKEKSKKTKNKKKKKK--AEK 1015
Query: 326 EEISNAREQKRSALRENKEKGGKQQRSK 243
E+ +Q++S + K+K K++ K
Sbjct: 1016 EQEKEKEKQRKSKKEKEKDKKRKKEEKK 1043
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = -3
Query: 494 PSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSKEEIS 315
PS+ + ++SE ++E S S+ ++ SSEP+ KR++K K + +
Sbjct: 940 PSSSSSSSSSSDTDSEDSSEEDS---SSDSSSESSSSDSSSEPKKKRKRKDKDKKKSKKA 996
Query: 314 NAREQKRSALRENKEKGGKQQRSKRQ 237
+ K++ ++ K+K K+Q +++
Sbjct: 997 TKEKSKKTKNKKKKKKAEKEQEKEKE 1022
Score = 33.9 bits (76), Expect = 1.1
Identities = 19/78 (24%), Positives = 39/78 (49%)
Frame = -3
Query: 479 KENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSKEEISNAREQ 300
K++ K T E KTK K+K K + E E ++++K +++ +E+
Sbjct: 991 KKSKKATKEKSKKTKNKKK---------KKKAEKEQEKEKEKQRKSKKEKEKDKKRKKEE 1041
Query: 299 KRSALRENKEKGGKQQRS 246
K++A +++K + Q+ S
Sbjct: 1042 KKAAKKKSKHRRKSQESS 1059
Score = 32.3 bits (72), Expect = 3.3
Identities = 22/82 (26%), Positives = 42/82 (50%), Gaps = 2/82 (2%)
Frame = -3
Query: 476 ENGKQTS--ESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSKEEISNARE 303
E G+ T E +L TKE++K + S + K S P+ KRR+ R S+ ++R
Sbjct: 196 EEGEITDKDEDDLPTKEEKKAVASKSPPKETQRKQSRSPDGKRRRPR-SSSRSPSPSSRR 254
Query: 302 QKRSALRENKEKGGKQQRSKRQ 237
++RS + ++ + + +R+
Sbjct: 255 RRRSRSKGSRTRSRSKSPIRRR 276
>gb|AAL29144.1| SD04745p [Drosophila melanogaster]
Length = 751
Score = 44.7 bits (104), Expect = 6e-04
Identities = 28/88 (31%), Positives = 46/88 (51%)
Frame = -3
Query: 506 EEDKPSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSK 327
EED S+ E+ S SE K K KRK K + KA + S + ++K++KK+ K
Sbjct: 368 EEDSSSDSSSESSSSDSSSEPKKKRKRKDKDKKKSK-KATKEKSKKTKNKKKKKK--AEK 424
Query: 326 EEISNAREQKRSALRENKEKGGKQQRSK 243
E+ +Q++S + K+K K++ K
Sbjct: 425 EQEKEKEKQRKSKKEKEKDKKRKKEEKK 452
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/86 (23%), Positives = 44/86 (50%)
Frame = -3
Query: 494 PSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSKEEIS 315
PS+ + ++SE ++E S S+ ++ SSEP+ KR++K K + +
Sbjct: 349 PSSSSSSSSSSDTDSEDSSEEDS---SSDSSSESSSSDSSSEPKKKRKRKDKDKKKSKKA 405
Query: 314 NAREQKRSALRENKEKGGKQQRSKRQ 237
+ K++ ++ K+K K+Q +++
Sbjct: 406 TKEKSKKTKNKKKKKKAEKEQEKEKE 431
Score = 33.9 bits (76), Expect = 1.1
Identities = 19/78 (24%), Positives = 39/78 (49%)
Frame = -3
Query: 479 KENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPSKEEISNAREQ 300
K++ K T E KTK K+K K + E E ++++K +++ +E+
Sbjct: 400 KKSKKATKEKSKKTKNKKK---------KKKAEKEQEKEKEKQRKSKKEKEKDKKRKKEE 450
Query: 299 KRSALRENKEKGGKQQRS 246
K++A +++K + Q+ S
Sbjct: 451 KKAAKKKSKRRRKSQESS 468
>ref|NP_200403.1| nucleolar protein-like; protein id: At5g55915.1 [Arabidopsis
thaliana] gi|9758212|dbj|BAB08657.1| nucleolar
protein-like [Arabidopsis thaliana]
Length = 682
Score = 43.1 bits (100), Expect = 0.002
Identities = 27/85 (31%), Positives = 48/85 (55%), Gaps = 3/85 (3%)
Frame = -3
Query: 512 VEEEDKPSNGV---KENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKR 342
+EE +KPS V KE ++ ++ +L ++ K K N + S+P +++K+R
Sbjct: 598 IEETEKPSVPVRQPKERKEKKNKEKLAKSKEDKRGKKDKKSKSENVEEPSKPRKQKKKRR 657
Query: 341 LFPSKEEISNAREQKRSALRENKEK 267
+ K EI+ ARE+KR A+RE ++
Sbjct: 658 EW--KNEIAQAREEKRIAMREKAKE 680
>ref|XP_207798.1| similar to ORF 1~putative [Rattus norvegicus] [Mus musculus]
Length = 178
Score = 42.7 bits (99), Expect = 0.002
Identities = 26/91 (28%), Positives = 45/91 (48%)
Frame = -3
Query: 509 EEEDKPSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPS 330
EEE++ +E G++ E E + K+K+K K K K E E K +KK+
Sbjct: 88 EEEEEEREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKEEEEKEKKKK--RR 145
Query: 329 KEEISNAREQKRSALRENKEKGGKQQRSKRQ 237
KEE ++KR R + + +++R +R+
Sbjct: 146 KEEEEEEEKKKRRRRRRRRRRRRRRRRRRRR 176
Score = 38.5 bits (88), Expect = 0.046
Identities = 21/88 (23%), Positives = 41/88 (45%)
Frame = -3
Query: 509 EEEDKPSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRRKKRLFPS 330
EEE++ ++ E E K K+K+K K K + E + K++K+R
Sbjct: 90 EEEEREEEEEVGEEEEEKEKEKKKKKKKKKKKKKKKKKKKKRRKEEEEKEKKKKRRKEEE 149
Query: 329 KEEISNAREQKRSALRENKEKGGKQQRS 246
+EE R ++R R + + +++R+
Sbjct: 150 EEEEKKKRRRRRRRRRRRRRRRRRRRRN 177
>gb|AAM67083.1| unknown [Arabidopsis thaliana]
Length = 119
Score = 42.4 bits (98), Expect = 0.003
Identities = 25/83 (30%), Positives = 44/83 (52%), Gaps = 1/83 (1%)
Frame = -3
Query: 512 VEEEDKPSNGVKENGKQTSESELKTKEKRKFPSKPSNGIKANGKVSSEPESKRR-KKRLF 336
+EE +KPS V++ ++ + + K K + K+ + EP R+ KK+ +
Sbjct: 35 IEETEKPSVPVRQPKERKEKKNKEKLAKSKEDKRGKKDKKSKSENVEEPSKPRKQKKKRW 94
Query: 335 PSKEEISNAREQKRSALRENKEK 267
K EI+ ARE+KR A+RE ++
Sbjct: 95 EWKNEIAQAREEKRIAMREKAKE 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,084,571
Number of Sequences: 1393205
Number of extensions: 10021511
Number of successful extensions: 44135
Number of sequences better than 10.0: 679
Number of HSP's better than 10.0 without gapping: 37642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42749
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
