Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017674A_C01 KMC017674A_c01
(425 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65723.1| mKIAA1096 protein [Mus musculus] 33 0.63
gb|AAH28363.1| phosphatidylinositol glycan, class N [Homo sapiens] 30 6.9
ref|NP_036459.1| phosphatidylinositol glycan, class N [Homo sapi... 30 6.9
pir||T46311 hypothetical protein DKFZp434H0711.1 - human (fragme... 30 6.9
ref|NP_491670.1| Predicted CDS, WSN domain and BRCA1 C Terminus ... 30 6.9
>dbj|BAC65723.1| mKIAA1096 protein [Mus musculus]
Length = 1153
Score = 33.5 bits (75), Expect = 0.63
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = +1
Query: 166 PITVSSLTQGSSPTPDSILR---------VIHSSSSPHLHSHKV*AKILHRLSQFHA*TA 318
P+T SS +Q S P P +L ++ S+S P L S A + A TA
Sbjct: 881 PVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSA-TA 939
Query: 319 TPIQSHPCFPVSARFFFCPLASSPSASVI 405
P S P P SA PLA + +AS +
Sbjct: 940 VPSISTPAVPASAPTASVPLAPASAASTV 968
>gb|AAH28363.1| phosphatidylinositol glycan, class N [Homo sapiens]
Length = 931
Score = 30.0 bits (66), Expect = 6.9
Identities = 15/52 (28%), Positives = 29/52 (54%)
Frame = +2
Query: 227 SSTVLQVLISTRTKFKRRFSIALANFMLKLQLQSNHTLVFPCRLASFFVLWL 382
+S+++ L+S+ F+R FSI L+ L L + + +FP L+ +W+
Sbjct: 693 ASSLVVPLLSSPVLFQRLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFVWI 744
>ref|NP_036459.1| phosphatidylinositol glycan, class N [Homo sapiens]
gi|29029537|ref|NP_789744.1| phosphatidylinositol
glycan, class N [Homo sapiens] gi|4206155|gb|AAD11432.1|
Mcd4p homolog [Homo sapiens]
Length = 931
Score = 30.0 bits (66), Expect = 6.9
Identities = 15/52 (28%), Positives = 29/52 (54%)
Frame = +2
Query: 227 SSTVLQVLISTRTKFKRRFSIALANFMLKLQLQSNHTLVFPCRLASFFVLWL 382
+S+++ L+S+ F+R FSI L+ L L + + +FP L+ +W+
Sbjct: 693 ASSLVVPLLSSPVLFQRLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFVWI 744
>pir||T46311 hypothetical protein DKFZp434H0711.1 - human (fragment)
gi|6808356|emb|CAB70839.1| hypothetical protein [Homo
sapiens]
Length = 825
Score = 30.0 bits (66), Expect = 6.9
Identities = 15/52 (28%), Positives = 29/52 (54%)
Frame = +2
Query: 227 SSTVLQVLISTRTKFKRRFSIALANFMLKLQLQSNHTLVFPCRLASFFVLWL 382
+S+++ L+S+ F+R FSI L+ L L + + +FP L+ +W+
Sbjct: 587 ASSLVVPLLSSPVLFQRLFSILLSLMSTYLLLSTGYEALFPLVLSCLMFVWI 638
>ref|NP_491670.1| Predicted CDS, WSN domain and BRCA1 C Terminus domain containing
protein family member [Caenorhabditis elegans]
gi|7504456|pir||T33153 hypothetical protein F56H1.3 -
Caenorhabditis elegans gi|3193164|gb|AAC19199.1|
Hypothetical protein F56H1.3 [Caenorhabditis elegans]
Length = 1101
Score = 30.0 bits (66), Expect = 6.9
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 206 HPTLFFESSTVLQVLISTRTKFKRRFSIALANFMLKLQLQSNHTLVFPCRL 358
H LF +S + Q +S + KFK++ ++ F L L L N T++ CR+
Sbjct: 14 HAELFIKSH-INQNKLSIKDKFKKKLTMFSIPFALVLLLFENFTIIVLCRI 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,317,328
Number of Sequences: 1393205
Number of extensions: 7390100
Number of successful extensions: 20749
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20723
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
