Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017670A_C01 KMC017670A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_732741.1| CG31160-PA [Drosophila melanogaster] gi|2317196... 35 0.36
ref|NP_347838.1| Predicted membrane protein [Clostridium acetobu... 33 1.8
ref|NP_178979.1| unknown protein; protein id: At2g13550.1 [Arabi... 33 1.8
ref|NP_477152.1| APC-like CG1451-PA gi|7301707|gb|AAF56820.1| CG... 33 1.8
pir||T13825 adenomatous polyposis coli protein - fruit fly (Dros... 33 1.8
>ref|NP_732741.1| CG31160-PA [Drosophila melanogaster] gi|23171965|gb|AAF55998.2|
CG31160-PA [Drosophila melanogaster]
Length = 681
Score = 35.4 bits (80), Expect = 0.36
Identities = 22/70 (31%), Positives = 29/70 (41%)
Frame = +1
Query: 76 NSTPNKYQTKKPPPKVKKQSKRAFLGETNLQLHHHESLGIRLPFRIPQHHHIHIHLHIRT 255
N N + + PPP + T HHH LG LP + QHH H+
Sbjct: 493 NRVTNMFANQTPPPPPPPPPLP--VASTPHHPHHHHHLGQPLPNLLVQHHPAPSHMEQHG 550
Query: 256 NSSSLFIIPN 285
+S+SL PN
Sbjct: 551 SSASLLHNPN 560
>ref|NP_347838.1| Predicted membrane protein [Clostridium acetobutylicum]
gi|25500574|pir||G97048 probable membrane protein
[imported] - Clostridium acetobutylicum
gi|15024129|gb|AAK79178.1|AE007634_8 Predicted membrane
protein [Clostridium acetobutylicum]
Length = 200
Score = 33.1 bits (74), Expect = 1.8
Identities = 24/60 (40%), Positives = 30/60 (50%)
Frame = +2
Query: 173 ITMSLLASGSHSGFHSTIIFIFIFIFEPIHHHFSSSLISNPSFPAEYITNHYSKIPHATI 352
I +S+ A G H GFHS H SSS IS SF ++ IT H S I H+T+
Sbjct: 18 IAVSISARGVHGGFHSGSFH--------SSFHSSSSHISTHSFSSKSIT-HSSGIKHSTL 68
>ref|NP_178979.1| unknown protein; protein id: At2g13550.1 [Arabidopsis thaliana]
gi|25371258|pir||D84508 hypothetical protein At2g13550
[imported] - Arabidopsis thaliana
gi|4558660|gb|AAD22678.1| unknown protein [Arabidopsis
thaliana]
Length = 181
Score = 33.1 bits (74), Expect = 1.8
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Frame = +1
Query: 64 STDSNSTPNKYQTKKPP---PKVKKQSKRAFLG--ETNLQLHHHESLGIRLPFRIPQHHH 228
STD + + Q+K P PK+K+ K ETNL+ + +G R PQHH
Sbjct: 96 STDKTRSRSGNQSKPQPHIQPKLKQSLKTGAANNIETNLRNRYRREIGP----RTPQHHQ 151
Query: 229 IHIHLHIRT 255
+ H+ I+T
Sbjct: 152 PYNHITIKT 160
>ref|NP_477152.1| APC-like CG1451-PA gi|7301707|gb|AAF56820.1| CG1451-PA [Drosophila
melanogaster]
Length = 2417
Score = 33.1 bits (74), Expect = 1.8
Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 19/78 (24%)
Frame = +1
Query: 64 STDSNSTPNK-----------YQTKKPPPKVKKQSKRAFLGETNLQ----LHHHESLGIR 198
S+DSN +K Y+TK+P + ++ ++ +G +++Q L +SL ++
Sbjct: 1396 SSDSNDNQSKSLFELCILKGMYKTKEPGARAQQMQEQPIVGSSSVQSNPSLKQFDSLPVQ 1455
Query: 199 LP----FRIPQHHHIHIH 240
LP + +HHH H H
Sbjct: 1456 LPSSGQVKRQRHHHHHHH 1473
>pir||T13825 adenomatous polyposis coli protein - fruit fly (Drosophila
melanogaster) gi|1800229|gb|AAB41404.1| adenomatous
polyposis coli [Drosophila melanogaster]
Length = 2416
Score = 33.1 bits (74), Expect = 1.8
Identities = 21/78 (26%), Positives = 39/78 (49%), Gaps = 19/78 (24%)
Frame = +1
Query: 64 STDSNSTPNK-----------YQTKKPPPKVKKQSKRAFLGETNLQ----LHHHESLGIR 198
S+DSN +K Y+TK+P + ++ ++ +G +++Q L +SL ++
Sbjct: 1395 SSDSNDNQSKSLFELCILKGMYKTKEPGARAQQMQEQPIVGSSSVQSNPSLKQFDSLPVQ 1454
Query: 199 LP----FRIPQHHHIHIH 240
LP + +HHH H H
Sbjct: 1455 LPSSGQVKRQRHHHHHHH 1472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,668,233
Number of Sequences: 1393205
Number of extensions: 9785934
Number of successful extensions: 26258
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 24073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25976
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
