Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017662A_C01 KMC017662A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198046.1| putative protein; protein id: At5g26940.1, supp... 124 6e-28
gb|AAM64709.1| unknown [Arabidopsis thaliana] 124 6e-28
ref|NP_036037.1| three prime repair exonuclease 2 [Mus musculus]... 44 0.002
ref|XP_219746.1| similar to three prime repair exonuclease 2 [Mu... 42 0.004
ref|NP_009136.1| three prime repair exonuclease 2, isoform a; ex... 41 0.009
>ref|NP_198046.1| putative protein; protein id: At5g26940.1, supported by cDNA:
32265. [Arabidopsis thaliana] gi|7485249|pir||T01771
hypothetical protein A_IG002P16.22 - Arabidopsis
thaliana
Length = 316
Score = 124 bits (312), Expect = 6e-28
Identities = 67/135 (49%), Positives = 86/135 (63%)
Frame = -2
Query: 556 LHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLFLDTLPLGRELMMKL 377
L YV SR+KPGGYV+ VAHN +SFD F INE R S +IP NWL LD+LPL RE M +
Sbjct: 184 LRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSV 243
Query: 376 KAESEALTFYGVPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLTFDLKLT 197
+ P K ++L AL ++Y++ G AHRA+ DV LS +F +LT DLKL+
Sbjct: 244 E-----------PTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDLKLS 292
Query: 196 LSDLVEKSFQESDIT 152
LSDLV + SDI+
Sbjct: 293 LSDLVLRCHTASDIS 307
>gb|AAM64709.1| unknown [Arabidopsis thaliana]
Length = 316
Score = 124 bits (312), Expect = 6e-28
Identities = 67/135 (49%), Positives = 86/135 (63%)
Frame = -2
Query: 556 LHYVRSREKPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLFLDTLPLGRELMMKL 377
L YV SR+KPGGYV+ VAHN +SFD F INE R S +IP NWL LD+LPL RE M +
Sbjct: 184 LRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSV 243
Query: 376 KAESEALTFYGVPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIFSRLTFDLKLT 197
+ P K ++L AL ++Y++ G AHRA+ DV LS +F +LT DLKL+
Sbjct: 244 E-----------PTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQKLTIDLKLS 292
Query: 196 LSDLVEKSFQESDIT 152
LSDLV + SDI+
Sbjct: 293 LSDLVLRCHTASDIS 307
>ref|NP_036037.1| three prime repair exonuclease 2 [Mus musculus]
gi|5731111|gb|AAD48777.1| 3'-5' exonuclease TREX2 [Mus
musculus]
Length = 236
Score = 43.5 bits (101), Expect = 0.002
Identities = 34/99 (34%), Positives = 44/99 (44%)
Frame = -2
Query: 523 GYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLFLDTLPLGRELMMKLKAESEALTFYG 344
G + VAHN +D P EL R +P + + LDTLP R L +A S G
Sbjct: 110 GPICLVAHNGFDYDFPLLCTELQRLGAHLPQDTVCLDTLPALRGLD---RAHSHGTRAQG 166
Query: 343 VPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIF 227
+ +LA+L Y AAH A DV L +IF
Sbjct: 167 ----RKSYSLASLFHRYFQAEPSAAHSAEGDVHTLLLIF 201
>ref|XP_219746.1| similar to three prime repair exonuclease 2 [Mus musculus] [Rattus
norvegicus]
Length = 236
Score = 42.4 bits (98), Expect = 0.004
Identities = 33/99 (33%), Positives = 44/99 (44%)
Frame = -2
Query: 523 GYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLFLDTLPLGRELMMKLKAESEALTFYG 344
G + VAHN +D P EL R +P + + LDTLP R L + S G
Sbjct: 110 GPICLVAHNGFDYDFPLLCTELQRLGAHLPRDTVCLDTLPALRGLD---RVHSHGTRAQG 166
Query: 343 VPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIF 227
+ +LA+L Y AAH A DV+ L +IF
Sbjct: 167 ----RKSYSLASLFHRYFQAEPSAAHSAEGDVNTLLLIF 201
>ref|NP_009136.1| three prime repair exonuclease 2, isoform a; expressed-Xq28STS
protein; 26S proteasome-associated UCH interacting
protein 1; 3'-5' exonuclease; Xq28, 2000bp sequence
contg. ORF [Homo sapiens] gi|18375539|ref|NP_542430.1|
three prime repair exonuclease 2, isoform a;
expressed-Xq28STS protein; 26S proteasome-associated UCH
interacting protein 1; 3'-5' exonuclease; Xq28, 2000bp
sequence contg. ORF [Homo sapiens]
gi|5731109|gb|AAD48776.1| 3'-5' exonuclease TREX2 [Homo
sapiens] gi|12751317|gb|AAK07617.1|AF319570_2 3'-5'
exonuclease TREX2 [Homo sapiens]
gi|12751323|gb|AAK07620.1|AF319573_2 3'-5' exonuclease
TREX2 [Homo sapiens]
Length = 236
Score = 41.2 bits (95), Expect = 0.009
Identities = 33/102 (32%), Positives = 45/102 (43%)
Frame = -2
Query: 532 KPGGYVLWVAHNARSFDVPFFINELGRSSVKIPSNWLFLDTLPLGRELMMKLKAESEALT 353
+ G + VAHN +D P EL R ++P + + LDTLP R L +A S
Sbjct: 107 RQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLD---RAHSHGTR 163
Query: 352 FYGVPEKKPPANLAALCEHYNVKLNGAAHRAMVDVDALSVIF 227
G + +L +L Y AAH A DV L +IF
Sbjct: 164 ARG----RQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIF 201
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,952,749
Number of Sequences: 1393205
Number of extensions: 8996123
Number of successful extensions: 21754
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 21233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21745
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
